Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08155

Experiment: malate (C) and Ammonium chloride (N); with TAPS; with PEG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08150 and PFLU_RS08155 are separated by 12 nucleotidesPFLU_RS08155 and PFLU_RS30510 are separated by 5 nucleotides PFLU_RS08150: PFLU_RS08150 - capsular polysaccharide biosynthesis protein CapF, at 1,820,398 to 1,821,525 _RS08150 PFLU_RS08155: PFLU_RS08155 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 1,821,538 to 1,822,668 _RS08155 PFLU_RS30510: PFLU_RS30510 - glycosyltransferase family 4 protein, at 1,822,674 to 1,823,891 _RS30510 Position (kb) 1821 1822 1823Strain fitness (log2 ratio) -3 -2 -1 0 1at 1821.633 kb on + strandat 1821.706 kb on - strand, within PFLU_RS08155at 1821.716 kb on - strand, within PFLU_RS08155at 1821.764 kb on + strand, within PFLU_RS08155at 1821.767 kb on + strand, within PFLU_RS08155at 1821.770 kb on + strand, within PFLU_RS08155at 1821.770 kb on + strand, within PFLU_RS08155at 1821.770 kb on + strand, within PFLU_RS08155at 1821.771 kb on - strand, within PFLU_RS08155at 1821.835 kb on - strand, within PFLU_RS08155at 1821.840 kb on + strand, within PFLU_RS08155at 1821.840 kb on + strand, within PFLU_RS08155at 1821.841 kb on - strand, within PFLU_RS08155at 1821.841 kb on - strand, within PFLU_RS08155at 1821.977 kb on - strand, within PFLU_RS08155at 1822.002 kb on - strand, within PFLU_RS08155at 1822.124 kb on + strand, within PFLU_RS08155at 1822.284 kb on - strand, within PFLU_RS08155at 1822.342 kb on - strand, within PFLU_RS08155at 1822.342 kb on - strand, within PFLU_RS08155at 1822.344 kb on + strand, within PFLU_RS08155at 1822.571 kb on + strandat 1822.667 kb on - strandat 1822.800 kb on + strand, within PFLU_RS30510at 1822.933 kb on - strand, within PFLU_RS30510at 1822.994 kb on - strand, within PFLU_RS30510at 1823.060 kb on - strand, within PFLU_RS30510at 1823.169 kb on + strand, within PFLU_RS30510at 1823.169 kb on + strand, within PFLU_RS30510at 1823.169 kb on + strand, within PFLU_RS30510at 1823.169 kb on + strand, within PFLU_RS30510at 1823.170 kb on - strand, within PFLU_RS30510at 1823.170 kb on - strand, within PFLU_RS30510at 1823.198 kb on - strand, within PFLU_RS30510at 1823.265 kb on - strand, within PFLU_RS30510at 1823.303 kb on + strand, within PFLU_RS30510at 1823.345 kb on - strand, within PFLU_RS30510at 1823.380 kb on + strand, within PFLU_RS30510at 1823.381 kb on - strand, within PFLU_RS30510at 1823.634 kb on + strand, within PFLU_RS30510at 1823.635 kb on - strand, within PFLU_RS30510at 1823.637 kb on - strand, within PFLU_RS30510

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Per-strain Table

Position Strand Gene LocusTag Fraction malate (C) and Ammonium chloride (N); with TAPS; with PEG
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1,821,633 + -3.1
1,821,706 - PFLU_RS08155 0.15 -1.4
1,821,716 - PFLU_RS08155 0.16 -2.1
1,821,764 + PFLU_RS08155 0.20 -0.7
1,821,767 + PFLU_RS08155 0.20 -0.2
1,821,770 + PFLU_RS08155 0.21 -1.6
1,821,770 + PFLU_RS08155 0.21 -1.7
1,821,770 + PFLU_RS08155 0.21 -1.2
1,821,771 - PFLU_RS08155 0.21 -1.2
1,821,835 - PFLU_RS08155 0.26 -0.2
1,821,840 + PFLU_RS08155 0.27 -2.3
1,821,840 + PFLU_RS08155 0.27 -0.1
1,821,841 - PFLU_RS08155 0.27 -0.5
1,821,841 - PFLU_RS08155 0.27 -1.5
1,821,977 - PFLU_RS08155 0.39 -1.8
1,822,002 - PFLU_RS08155 0.41 -1.7
1,822,124 + PFLU_RS08155 0.52 -1.6
1,822,284 - PFLU_RS08155 0.66 -2.3
1,822,342 - PFLU_RS08155 0.71 -0.7
1,822,342 - PFLU_RS08155 0.71 -2.3
1,822,344 + PFLU_RS08155 0.71 -2.4
1,822,571 + -1.7
1,822,667 - -1.4
1,822,800 + PFLU_RS30510 0.10 -0.6
1,822,933 - PFLU_RS30510 0.21 -0.2
1,822,994 - PFLU_RS30510 0.26 -0.7
1,823,060 - PFLU_RS30510 0.32 -0.9
1,823,169 + PFLU_RS30510 0.41 -1.2
1,823,169 + PFLU_RS30510 0.41 -1.1
1,823,169 + PFLU_RS30510 0.41 -1.5
1,823,169 + PFLU_RS30510 0.41 -0.5
1,823,170 - PFLU_RS30510 0.41 -2.4
1,823,170 - PFLU_RS30510 0.41 -1.4
1,823,198 - PFLU_RS30510 0.43 -0.6
1,823,265 - PFLU_RS30510 0.49 -0.9
1,823,303 + PFLU_RS30510 0.52 -1.3
1,823,345 - PFLU_RS30510 0.55 -0.8
1,823,380 + PFLU_RS30510 0.58 -0.8
1,823,381 - PFLU_RS30510 0.58 -1.2
1,823,634 + PFLU_RS30510 0.79 -0.7
1,823,635 - PFLU_RS30510 0.79 -0.7
1,823,637 - PFLU_RS30510 0.79 +0.4

Or see this region's nucleotide sequence