Experiment: malate (C) and Ammonium chloride (N); with TAPS; with PEG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03065 and PFLU_RS03070 are separated by 2 nucleotides PFLU_RS03070 and PFLU_RS03075 are separated by 194 nucleotides PFLU_RS03075 and PFLU_RS03080 are separated by 143 nucleotides
PFLU_RS03065: PFLU_RS03065 - DUF2333 family protein, at 707,401 to 708,468
_RS03065
PFLU_RS03070: PFLU_RS03070 - NUDIX hydrolase, at 708,471 to 709,007
_RS03070
PFLU_RS03075: PFLU_RS03075 - translation initiation factor Sui1, at 709,202 to 709,573
_RS03075
PFLU_RS03080: PFLU_RS03080 - arginine decarboxylase, at 709,717 to 711,630
_RS03080
Position (kb) 709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 708.377 kb on + strand at 708.377 kb on + strand at 708.378 kb on - strand at 708.409 kb on + strand at 708.409 kb on + strand at 708.409 kb on + strand at 708.409 kb on + strand at 708.409 kb on + strand at 708.409 kb on + strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.410 kb on - strand at 708.480 kb on - strand at 708.614 kb on + strand, within PFLU_RS03070 at 708.615 kb on - strand, within PFLU_RS03070 at 708.615 kb on - strand, within PFLU_RS03070 at 708.615 kb on - strand, within PFLU_RS03070 at 708.615 kb on - strand, within PFLU_RS03070 at 708.615 kb on - strand, within PFLU_RS03070 at 708.615 kb on - strand, within PFLU_RS03070 at 708.615 kb on - strand, within PFLU_RS03070 at 708.678 kb on + strand, within PFLU_RS03070 at 708.678 kb on + strand, within PFLU_RS03070 at 708.679 kb on - strand, within PFLU_RS03070 at 708.679 kb on - strand, within PFLU_RS03070 at 708.679 kb on - strand, within PFLU_RS03070 at 708.679 kb on - strand, within PFLU_RS03070 at 708.732 kb on + strand, within PFLU_RS03070 at 708.732 kb on + strand, within PFLU_RS03070 at 708.732 kb on + strand, within PFLU_RS03070 at 708.733 kb on - strand, within PFLU_RS03070 at 708.733 kb on - strand, within PFLU_RS03070 at 708.733 kb on - strand, within PFLU_RS03070 at 708.733 kb on - strand, within PFLU_RS03070 at 708.733 kb on - strand, within PFLU_RS03070 at 708.733 kb on - strand, within PFLU_RS03070 at 708.733 kb on - strand, within PFLU_RS03070 at 708.810 kb on + strand, within PFLU_RS03070 at 708.810 kb on + strand, within PFLU_RS03070 at 708.810 kb on - strand, within PFLU_RS03070 at 708.811 kb on - strand, within PFLU_RS03070 at 708.849 kb on + strand, within PFLU_RS03070 at 708.849 kb on + strand, within PFLU_RS03070 at 708.917 kb on + strand, within PFLU_RS03070 at 708.919 kb on + strand, within PFLU_RS03070 at 708.919 kb on + strand, within PFLU_RS03070 at 708.919 kb on + strand, within PFLU_RS03070 at 708.919 kb on + strand, within PFLU_RS03070 at 708.919 kb on + strand, within PFLU_RS03070 at 708.919 kb on + strand, within PFLU_RS03070 at 708.919 kb on + strand, within PFLU_RS03070 at 708.920 kb on - strand, within PFLU_RS03070 at 708.920 kb on - strand, within PFLU_RS03070 at 708.920 kb on - strand, within PFLU_RS03070 at 708.920 kb on - strand, within PFLU_RS03070 at 708.920 kb on - strand, within PFLU_RS03070 at 708.920 kb on - strand, within PFLU_RS03070 at 708.920 kb on - strand, within PFLU_RS03070 at 708.954 kb on + strand at 708.954 kb on + strand at 708.987 kb on + strand at 708.987 kb on + strand at 708.988 kb on - strand at 708.988 kb on - strand at 708.988 kb on - strand at 709.037 kb on + strand at 709.037 kb on + strand at 709.037 kb on + strand at 709.037 kb on + strand at 709.037 kb on + strand at 709.037 kb on + strand at 709.037 kb on + strand at 709.037 kb on + strand at 709.038 kb on - strand at 709.038 kb on - strand at 709.038 kb on - strand at 709.038 kb on - strand at 709.059 kb on + strand at 709.060 kb on - strand at 709.152 kb on + strand at 709.152 kb on + strand at 709.303 kb on + strand, within PFLU_RS03075 at 709.304 kb on - strand, within PFLU_RS03075 at 709.304 kb on - strand, within PFLU_RS03075 at 709.339 kb on + strand, within PFLU_RS03075 at 709.548 kb on - strand at 709.621 kb on + strand at 709.621 kb on + strand at 709.621 kb on + strand at 709.621 kb on + strand at 709.621 kb on + strand at 709.622 kb on - strand at 709.657 kb on + strand at 709.657 kb on + strand at 709.658 kb on - strand at 709.658 kb on - strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.701 kb on + strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.702 kb on - strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.703 kb on + strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.704 kb on - strand at 709.705 kb on + strand at 709.705 kb on + strand at 709.705 kb on + strand at 709.705 kb on + strand at 709.705 kb on + strand at 709.705 kb on + strand at 709.705 kb on + strand at 709.705 kb on + strand at 709.705 kb on + strand at 709.705 kb on + strand at 709.706 kb on - strand at 709.706 kb on - strand at 709.706 kb on - strand at 709.706 kb on - strand at 709.706 kb on - strand at 709.706 kb on - strand at 709.706 kb on - strand at 709.706 kb on - strand at 709.706 kb on - strand at 709.706 kb on - strand at 709.725 kb on - strand at 709.725 kb on - strand at 709.811 kb on - strand at 709.838 kb on + strand at 709.838 kb on + strand at 709.838 kb on + strand at 709.839 kb on - strand at 709.839 kb on - strand at 709.866 kb on + strand at 709.866 kb on + strand at 709.867 kb on - strand at 709.882 kb on + strand at 709.882 kb on + strand at 709.882 kb on + strand at 709.882 kb on + strand at 709.883 kb on - strand at 709.883 kb on - strand at 709.883 kb on - strand at 709.883 kb on - strand at 709.905 kb on + strand at 709.905 kb on + strand at 709.905 kb on + strand at 709.906 kb on - strand at 709.906 kb on - strand at 709.996 kb on - strand, within PFLU_RS03080 at 710.012 kb on - strand, within PFLU_RS03080 at 710.023 kb on + strand, within PFLU_RS03080 at 710.023 kb on + strand, within PFLU_RS03080 at 710.023 kb on + strand, within PFLU_RS03080 at 710.023 kb on + strand, within PFLU_RS03080 at 710.023 kb on + strand, within PFLU_RS03080 at 710.024 kb on - strand, within PFLU_RS03080 at 710.024 kb on - strand, within PFLU_RS03080 at 710.024 kb on - strand, within PFLU_RS03080 at 710.024 kb on - strand, within PFLU_RS03080 at 710.170 kb on - strand, within PFLU_RS03080 at 710.185 kb on + strand, within PFLU_RS03080 at 710.186 kb on - strand, within PFLU_RS03080 at 710.304 kb on + strand, within PFLU_RS03080 at 710.304 kb on + strand, within PFLU_RS03080 at 710.512 kb on + strand, within PFLU_RS03080 at 710.513 kb on - strand, within PFLU_RS03080 at 710.513 kb on - strand, within PFLU_RS03080 at 710.542 kb on + strand, within PFLU_RS03080 at 710.542 kb on + strand, within PFLU_RS03080 at 710.545 kb on + strand, within PFLU_RS03080 at 710.545 kb on + strand, within PFLU_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction malate (C) and Ammonium chloride (N); with TAPS; with PEG remove 708,377 + +0.4 708,377 + -1.0 708,378 - -0.6 708,409 + +0.9 708,409 + +0.5 708,409 + -0.5 708,409 + +0.4 708,409 + +0.9 708,409 + -0.8 708,410 - -0.4 708,410 - +1.1 708,410 - +0.3 708,410 - -0.1 708,410 - +0.4 708,410 - +0.8 708,410 - +0.5 708,410 - -0.9 708,410 - +0.3 708,410 - -0.9 708,410 - -2.7 708,410 - -0.3 708,480 - +0.3 708,614 + PFLU_RS03070 0.27 -0.5 708,615 - PFLU_RS03070 0.27 +0.2 708,615 - PFLU_RS03070 0.27 +1.0 708,615 - PFLU_RS03070 0.27 +0.3 708,615 - PFLU_RS03070 0.27 -1.0 708,615 - PFLU_RS03070 0.27 -0.1 708,615 - PFLU_RS03070 0.27 +0.8 708,615 - PFLU_RS03070 0.27 -0.6 708,678 + PFLU_RS03070 0.39 +0.2 708,678 + PFLU_RS03070 0.39 -0.2 708,679 - PFLU_RS03070 0.39 -0.6 708,679 - PFLU_RS03070 0.39 -0.0 708,679 - PFLU_RS03070 0.39 +0.7 708,679 - PFLU_RS03070 0.39 +0.4 708,732 + PFLU_RS03070 0.49 -0.4 708,732 + PFLU_RS03070 0.49 +0.1 708,732 + PFLU_RS03070 0.49 -0.0 708,733 - PFLU_RS03070 0.49 +0.4 708,733 - PFLU_RS03070 0.49 -0.0 708,733 - PFLU_RS03070 0.49 +0.8 708,733 - PFLU_RS03070 0.49 +1.1 708,733 - PFLU_RS03070 0.49 -0.4 708,733 - PFLU_RS03070 0.49 +1.2 708,733 - PFLU_RS03070 0.49 -0.5 708,810 + PFLU_RS03070 0.63 -1.0 708,810 + PFLU_RS03070 0.63 -0.2 708,810 - PFLU_RS03070 0.63 -0.3 708,811 - PFLU_RS03070 0.63 +1.1 708,849 + PFLU_RS03070 0.70 +0.5 708,849 + PFLU_RS03070 0.70 +0.1 708,917 + PFLU_RS03070 0.83 +1.0 708,919 + PFLU_RS03070 0.83 -0.3 708,919 + PFLU_RS03070 0.83 +0.1 708,919 + PFLU_RS03070 0.83 +0.4 708,919 + PFLU_RS03070 0.83 +0.1 708,919 + PFLU_RS03070 0.83 +0.1 708,919 + PFLU_RS03070 0.83 +0.3 708,919 + PFLU_RS03070 0.83 -0.6 708,920 - PFLU_RS03070 0.84 +0.4 708,920 - PFLU_RS03070 0.84 +0.4 708,920 - PFLU_RS03070 0.84 +0.1 708,920 - PFLU_RS03070 0.84 -0.4 708,920 - PFLU_RS03070 0.84 -0.2 708,920 - PFLU_RS03070 0.84 -0.4 708,920 - PFLU_RS03070 0.84 -1.9 708,954 + +0.8 708,954 + +0.8 708,987 + +0.1 708,987 + +0.0 708,988 - -0.5 708,988 - -1.9 708,988 - -0.4 709,037 + +0.8 709,037 + +0.1 709,037 + +0.2 709,037 + -0.1 709,037 + -0.3 709,037 + -0.3 709,037 + +0.2 709,037 + -0.3 709,038 - -1.0 709,038 - -0.4 709,038 - -1.1 709,038 - -1.8 709,059 + +1.1 709,060 - -0.4 709,152 + +0.0 709,152 + -0.7 709,303 + PFLU_RS03075 0.27 -1.3 709,304 - PFLU_RS03075 0.27 -0.7 709,304 - PFLU_RS03075 0.27 -1.3 709,339 + PFLU_RS03075 0.37 +0.9 709,548 - +0.2 709,621 + -0.5 709,621 + -0.4 709,621 + -0.6 709,621 + +0.0 709,621 + +1.0 709,622 - -0.6 709,657 + +1.3 709,657 + -0.4 709,658 - +0.6 709,658 - +0.3 709,701 + -0.2 709,701 + +1.8 709,701 + -0.9 709,701 + -0.0 709,701 + +0.4 709,701 + +0.4 709,701 + +0.6 709,701 + +0.9 709,701 + +1.2 709,701 + -0.5 709,701 + +1.0 709,701 + +0.1 709,701 + -0.1 709,701 + -0.0 709,701 + -0.4 709,701 + -0.4 709,701 + +0.4 709,701 + +0.5 709,701 + -0.8 709,701 + +0.6 709,701 + -0.0 709,701 + +0.7 709,701 + -1.5 709,701 + +0.9 709,701 + +0.8 709,701 + +0.0 709,701 + -1.7 709,701 + +0.2 709,701 + -1.0 709,701 + +0.5 709,701 + -0.2 709,701 + +0.1 709,701 + +0.0 709,701 + +0.1 709,701 + +0.5 709,701 + +0.0 709,701 + +0.4 709,701 + +0.4 709,701 + +1.2 709,701 + -0.2 709,701 + -0.6 709,701 + -0.1 709,701 + -1.3 709,701 + +0.5 709,701 + -0.3 709,701 + -0.8 709,702 - +0.9 709,702 - -0.9 709,702 - -0.2 709,702 - +0.9 709,702 - -0.4 709,702 - -1.3 709,702 - -0.3 709,702 - -0.2 709,702 - -0.2 709,702 - +2.7 709,702 - +0.2 709,702 - -0.1 709,702 - +0.3 709,702 - -0.0 709,702 - -0.5 709,702 - +0.2 709,702 - +0.2 709,702 - +0.2 709,702 - +0.0 709,702 - +0.5 709,702 - -0.0 709,702 - +0.7 709,702 - -0.4 709,702 - -0.0 709,702 - +0.3 709,702 - +0.2 709,702 - +0.1 709,702 - -0.3 709,702 - +0.3 709,702 - -0.1 709,702 - +0.8 709,702 - -0.8 709,702 - +0.5 709,702 - +0.2 709,702 - +0.2 709,702 - -0.2 709,702 - -0.2 709,702 - +0.1 709,702 - -0.6 709,702 - +0.8 709,702 - +0.5 709,702 - +0.2 709,702 - +0.1 709,702 - -0.1 709,702 - +1.0 709,702 - +0.4 709,702 - -0.2 709,702 - -0.2 709,702 - +0.1 709,702 - +0.3 709,703 + +0.0 709,703 + +0.1 709,703 + +0.1 709,703 + -0.1 709,703 + +0.1 709,703 + +0.5 709,703 + +0.8 709,703 + -0.8 709,703 + -2.7 709,703 + +0.9 709,703 + +0.7 709,703 + +0.2 709,703 + +0.5 709,703 + +0.1 709,703 + +0.8 709,703 + +0.2 709,703 + +0.2 709,703 + -2.8 709,703 + -0.5 709,703 + -0.2 709,703 + +2.6 709,703 + +0.0 709,703 + +0.6 709,703 + +0.2 709,703 + +0.1 709,703 + -0.9 709,703 + -0.2 709,703 + -1.6 709,703 + +0.9 709,703 + +0.5 709,703 + -0.2 709,703 + -1.2 709,703 + -0.1 709,703 + -0.4 709,704 - +1.4 709,704 - -1.2 709,704 - -0.0 709,704 - -0.6 709,704 - +0.1 709,704 - +0.4 709,704 - +1.1 709,704 - +0.0 709,704 - -0.2 709,704 - +1.5 709,704 - +0.9 709,704 - -0.2 709,704 - -0.7 709,704 - -1.0 709,704 - -0.1 709,704 - -0.9 709,704 - -0.9 709,704 - +0.5 709,704 - -0.3 709,704 - -0.8 709,704 - -1.0 709,704 - -1.7 709,704 - +0.1 709,704 - +0.1 709,704 - -0.4 709,704 - +0.4 709,704 - +0.2 709,704 - -0.2 709,705 + +0.2 709,705 + -1.3 709,705 + +0.4 709,705 + -0.2 709,705 + -0.3 709,705 + -0.1 709,705 + +0.7 709,705 + +1.7 709,705 + -0.1 709,705 + +0.6 709,706 - +0.3 709,706 - -0.4 709,706 - -0.8 709,706 - +0.4 709,706 - +0.3 709,706 - -0.9 709,706 - -0.3 709,706 - -0.0 709,706 - +0.3 709,706 - -2.5 709,725 - +0.1 709,725 - -0.6 709,811 - -0.9 709,838 + +0.2 709,838 + -0.4 709,838 + +0.8 709,839 - +0.8 709,839 - -1.6 709,866 + +0.3 709,866 + +0.0 709,867 - -1.3 709,882 + +0.6 709,882 + +0.1 709,882 + -1.0 709,882 + -0.1 709,883 - -0.7 709,883 - +0.0 709,883 - -0.4 709,883 - +0.1 709,905 + +0.9 709,905 + +1.0 709,905 + -1.2 709,906 - -0.5 709,906 - -0.4 709,996 - PFLU_RS03080 0.15 +0.1 710,012 - PFLU_RS03080 0.15 -0.0 710,023 + PFLU_RS03080 0.16 +0.3 710,023 + PFLU_RS03080 0.16 -0.9 710,023 + PFLU_RS03080 0.16 -1.3 710,023 + PFLU_RS03080 0.16 -1.7 710,023 + PFLU_RS03080 0.16 -1.6 710,024 - PFLU_RS03080 0.16 -1.5 710,024 - PFLU_RS03080 0.16 -1.2 710,024 - PFLU_RS03080 0.16 +0.7 710,024 - PFLU_RS03080 0.16 +0.6 710,170 - PFLU_RS03080 0.24 +1.8 710,185 + PFLU_RS03080 0.24 -0.1 710,186 - PFLU_RS03080 0.25 +0.4 710,304 + PFLU_RS03080 0.31 -0.3 710,304 + PFLU_RS03080 0.31 +0.5 710,512 + PFLU_RS03080 0.42 +0.0 710,513 - PFLU_RS03080 0.42 +1.1 710,513 - PFLU_RS03080 0.42 -1.1 710,542 + PFLU_RS03080 0.43 +0.1 710,542 + PFLU_RS03080 0.43 -0.3 710,545 + PFLU_RS03080 0.43 -0.6 710,545 + PFLU_RS03080 0.43 +1.2
Or see this region's nucleotide sequence