Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01885

Experiment: malate (C) and Ammonium chloride (N); with TAPS; with PEG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01875 and PFLU_RS01880 overlap by 4 nucleotidesPFLU_RS01880 and PFLU_RS01885 overlap by 4 nucleotidesPFLU_RS01885 and PFLU_RS01890 are separated by 10 nucleotidesPFLU_RS01890 and PFLU_RS01895 are separated by 25 nucleotidesPFLU_RS01895 and PFLU_RS01900 are separated by 2 nucleotides PFLU_RS01875: PFLU_RS01875 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 424,955 to 425,662 _RS01875 PFLU_RS01880: PFLU_RS01880 - twin-arginine translocase subunit TatC, at 425,659 to 426,450 _RS01880 PFLU_RS01885: PFLU_RS01885 - Sec-independent protein translocase subunit TatB, at 426,447 to 426,851 _RS01885 PFLU_RS01890: PFLU_RS01890 - twin-arginine translocase TatA/TatE family subunit, at 426,862 to 427,140 _RS01890 PFLU_RS01895: PFLU_RS01895 - phosphoribosyl-ATP diphosphatase, at 427,166 to 427,498 _RS01895 PFLU_RS01900: PFLU_RS01900 - phosphoribosyl-AMP cyclohydrolase, at 427,501 to 427,893 _RS01900 Position (kb) 426 427Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 425.803 kb on - strand, within PFLU_RS01880at 425.852 kb on + strand, within PFLU_RS01880at 425.852 kb on + strand, within PFLU_RS01880at 425.853 kb on - strand, within PFLU_RS01880at 425.873 kb on + strand, within PFLU_RS01880at 425.873 kb on + strand, within PFLU_RS01880at 425.874 kb on - strand, within PFLU_RS01880at 425.874 kb on - strand, within PFLU_RS01880at 425.874 kb on - strand, within PFLU_RS01880at 425.874 kb on - strand, within PFLU_RS01880at 425.975 kb on + strand, within PFLU_RS01880at 425.975 kb on + strand, within PFLU_RS01880at 425.975 kb on + strand, within PFLU_RS01880at 425.975 kb on + strand, within PFLU_RS01880at 425.976 kb on - strand, within PFLU_RS01880at 425.976 kb on - strand, within PFLU_RS01880at 425.976 kb on - strand, within PFLU_RS01880at 426.059 kb on + strand, within PFLU_RS01880at 426.059 kb on + strand, within PFLU_RS01880at 426.059 kb on + strand, within PFLU_RS01880at 426.059 kb on + strand, within PFLU_RS01880at 426.060 kb on - strand, within PFLU_RS01880at 426.060 kb on - strand, within PFLU_RS01880at 426.080 kb on + strand, within PFLU_RS01880at 426.080 kb on + strand, within PFLU_RS01880at 426.080 kb on + strand, within PFLU_RS01880at 426.081 kb on - strand, within PFLU_RS01880at 426.081 kb on - strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.088 kb on + strand, within PFLU_RS01880at 426.089 kb on - strand, within PFLU_RS01880at 426.089 kb on - strand, within PFLU_RS01880at 426.089 kb on - strand, within PFLU_RS01880at 426.089 kb on - strand, within PFLU_RS01880at 426.089 kb on - strand, within PFLU_RS01880at 426.137 kb on + strand, within PFLU_RS01880at 426.137 kb on + strand, within PFLU_RS01880at 426.137 kb on + strand, within PFLU_RS01880at 426.138 kb on - strand, within PFLU_RS01880at 426.138 kb on - strand, within PFLU_RS01880at 426.281 kb on + strand, within PFLU_RS01880at 426.281 kb on + strand, within PFLU_RS01880at 426.281 kb on + strand, within PFLU_RS01880at 426.282 kb on - strand, within PFLU_RS01880at 426.311 kb on + strand, within PFLU_RS01880at 426.311 kb on + strand, within PFLU_RS01880at 426.311 kb on + strand, within PFLU_RS01880at 426.311 kb on + strand, within PFLU_RS01880at 426.311 kb on + strand, within PFLU_RS01880at 426.311 kb on + strand, within PFLU_RS01880at 426.312 kb on - strand, within PFLU_RS01880at 426.312 kb on - strand, within PFLU_RS01880at 426.312 kb on - strand, within PFLU_RS01880at 426.312 kb on - strand, within PFLU_RS01880at 426.312 kb on - strand, within PFLU_RS01880at 426.312 kb on - strand, within PFLU_RS01880at 426.312 kb on - strand, within PFLU_RS01880at 426.312 kb on - strand, within PFLU_RS01880at 426.335 kb on - strand, within PFLU_RS01880at 426.335 kb on - strand, within PFLU_RS01880at 426.385 kb on - strandat 426.417 kb on + strandat 426.417 kb on + strandat 426.417 kb on + strandat 426.417 kb on + strandat 426.417 kb on + strandat 426.418 kb on - strandat 426.418 kb on - strandat 426.418 kb on - strandat 426.418 kb on - strandat 426.418 kb on - strandat 426.418 kb on - strandat 426.418 kb on - strandat 426.418 kb on - strandat 426.418 kb on - strandat 426.418 kb on - strandat 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.808 kb on - strand, within PFLU_RS01885at 426.852 kb on + strandat 426.852 kb on + strandat 426.852 kb on + strandat 426.852 kb on + strandat 426.852 kb on + strandat 426.852 kb on + strandat 426.852 kb on + strandat 426.853 kb on - strandat 426.853 kb on - strandat 426.853 kb on - strandat 426.853 kb on - strandat 426.853 kb on - strandat 426.853 kb on - strandat 426.915 kb on + strand, within PFLU_RS01890at 426.915 kb on + strand, within PFLU_RS01890at 426.916 kb on - strand, within PFLU_RS01890at 426.916 kb on - strand, within PFLU_RS01890at 426.916 kb on - strand, within PFLU_RS01890at 426.916 kb on - strand, within PFLU_RS01890at 426.916 kb on - strand, within PFLU_RS01890at 427.020 kb on + strand, within PFLU_RS01890at 427.084 kb on + strand, within PFLU_RS01890at 427.084 kb on + strand, within PFLU_RS01890at 427.085 kb on - strand, within PFLU_RS01890at 427.085 kb on - strand, within PFLU_RS01890at 427.090 kb on + strand, within PFLU_RS01890at 427.091 kb on - strand, within PFLU_RS01890at 427.305 kb on + strand, within PFLU_RS01895at 427.305 kb on + strand, within PFLU_RS01895at 427.305 kb on + strand, within PFLU_RS01895at 427.305 kb on + strand, within PFLU_RS01895at 427.306 kb on - strand, within PFLU_RS01895at 427.413 kb on + strand, within PFLU_RS01895at 427.413 kb on + strand, within PFLU_RS01895at 427.413 kb on + strand, within PFLU_RS01895at 427.413 kb on + strand, within PFLU_RS01895at 427.414 kb on - strand, within PFLU_RS01895at 427.428 kb on + strand, within PFLU_RS01895at 427.428 kb on + strand, within PFLU_RS01895at 427.428 kb on + strand, within PFLU_RS01895at 427.428 kb on + strand, within PFLU_RS01895at 427.428 kb on + strand, within PFLU_RS01895at 427.428 kb on + strand, within PFLU_RS01895at 427.428 kb on + strand, within PFLU_RS01895at 427.428 kb on + strand, within PFLU_RS01895at 427.429 kb on - strand, within PFLU_RS01895at 427.429 kb on - strand, within PFLU_RS01895at 427.429 kb on - strand, within PFLU_RS01895at 427.429 kb on - strand, within PFLU_RS01895at 427.429 kb on - strand, within PFLU_RS01895at 427.429 kb on - strand, within PFLU_RS01895at 427.517 kb on + strandat 427.517 kb on + strandat 427.517 kb on + strandat 427.517 kb on + strandat 427.517 kb on + strandat 427.517 kb on + strandat 427.518 kb on - strandat 427.518 kb on - strandat 427.518 kb on - strandat 427.518 kb on - strandat 427.518 kb on - strandat 427.518 kb on - strandat 427.583 kb on + strand, within PFLU_RS01900at 427.583 kb on + strand, within PFLU_RS01900at 427.583 kb on + strand, within PFLU_RS01900at 427.584 kb on - strand, within PFLU_RS01900at 427.584 kb on - strand, within PFLU_RS01900at 427.584 kb on - strand, within PFLU_RS01900at 427.584 kb on - strand, within PFLU_RS01900at 427.584 kb on - strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900

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Per-strain Table

Position Strand Gene LocusTag Fraction malate (C) and Ammonium chloride (N); with TAPS; with PEG
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425,803 - PFLU_RS01880 0.18 +0.1
425,852 + PFLU_RS01880 0.24 -1.7
425,852 + PFLU_RS01880 0.24 -0.3
425,853 - PFLU_RS01880 0.24 +0.4
425,873 + PFLU_RS01880 0.27 +0.1
425,873 + PFLU_RS01880 0.27 -2.6
425,874 - PFLU_RS01880 0.27 -0.6
425,874 - PFLU_RS01880 0.27 -0.4
425,874 - PFLU_RS01880 0.27 -0.2
425,874 - PFLU_RS01880 0.27 +0.1
425,975 + PFLU_RS01880 0.40 +0.7
425,975 + PFLU_RS01880 0.40 +0.7
425,975 + PFLU_RS01880 0.40 -1.1
425,975 + PFLU_RS01880 0.40 -1.6
425,976 - PFLU_RS01880 0.40 -1.1
425,976 - PFLU_RS01880 0.40 -1.6
425,976 - PFLU_RS01880 0.40 -1.1
426,059 + PFLU_RS01880 0.51 +1.7
426,059 + PFLU_RS01880 0.51 +1.5
426,059 + PFLU_RS01880 0.51 -1.1
426,059 + PFLU_RS01880 0.51 -0.6
426,060 - PFLU_RS01880 0.51 -0.6
426,060 - PFLU_RS01880 0.51 +0.6
426,080 + PFLU_RS01880 0.53 +2.7
426,080 + PFLU_RS01880 0.53 -2.4
426,080 + PFLU_RS01880 0.53 -0.9
426,081 - PFLU_RS01880 0.53 -1.5
426,081 - PFLU_RS01880 0.53 -1.3
426,088 + PFLU_RS01880 0.54 -1.5
426,088 + PFLU_RS01880 0.54 -1.7
426,088 + PFLU_RS01880 0.54 -0.5
426,088 + PFLU_RS01880 0.54 -1.6
426,088 + PFLU_RS01880 0.54 -0.9
426,088 + PFLU_RS01880 0.54 -0.7
426,088 + PFLU_RS01880 0.54 -1.2
426,088 + PFLU_RS01880 0.54 -1.3
426,088 + PFLU_RS01880 0.54 +0.4
426,088 + PFLU_RS01880 0.54 -1.5
426,088 + PFLU_RS01880 0.54 -2.4
426,089 - PFLU_RS01880 0.54 -0.3
426,089 - PFLU_RS01880 0.54 -1.0
426,089 - PFLU_RS01880 0.54 -0.9
426,089 - PFLU_RS01880 0.54 +0.4
426,089 - PFLU_RS01880 0.54 -0.6
426,137 + PFLU_RS01880 0.60 -0.9
426,137 + PFLU_RS01880 0.60 -0.8
426,137 + PFLU_RS01880 0.60 +1.7
426,138 - PFLU_RS01880 0.60 -0.2
426,138 - PFLU_RS01880 0.60 -0.9
426,281 + PFLU_RS01880 0.79 -0.3
426,281 + PFLU_RS01880 0.79 -2.4
426,281 + PFLU_RS01880 0.79 -0.2
426,282 - PFLU_RS01880 0.79 -1.0
426,311 + PFLU_RS01880 0.82 -2.1
426,311 + PFLU_RS01880 0.82 +1.7
426,311 + PFLU_RS01880 0.82 -0.6
426,311 + PFLU_RS01880 0.82 +0.7
426,311 + PFLU_RS01880 0.82 -1.6
426,311 + PFLU_RS01880 0.82 +0.9
426,312 - PFLU_RS01880 0.82 +0.7
426,312 - PFLU_RS01880 0.82 +0.7
426,312 - PFLU_RS01880 0.82 +1.7
426,312 - PFLU_RS01880 0.82 -0.6
426,312 - PFLU_RS01880 0.82 -0.9
426,312 - PFLU_RS01880 0.82 -2.5
426,312 - PFLU_RS01880 0.82 -2.5
426,312 - PFLU_RS01880 0.82 -0.6
426,335 - PFLU_RS01880 0.85 -0.9
426,335 - PFLU_RS01880 0.85 -0.5
426,385 - -0.3
426,417 + +0.7
426,417 + -0.4
426,417 + -0.9
426,417 + -0.5
426,417 + +1.1
426,418 - +0.7
426,418 - -0.6
426,418 - -0.5
426,418 - -2.3
426,418 - +0.7
426,418 - -0.3
426,418 - -1.7
426,418 - +0.7
426,418 - -1.1
426,418 - -1.9
426,650 + PFLU_RS01885 0.50 +0.3
426,650 + PFLU_RS01885 0.50 -0.4
426,650 + PFLU_RS01885 0.50 -0.0
426,650 + PFLU_RS01885 0.50 -1.1
426,650 + PFLU_RS01885 0.50 -0.9
426,650 + PFLU_RS01885 0.50 +1.7
426,650 + PFLU_RS01885 0.50 -1.5
426,650 + PFLU_RS01885 0.50 -0.1
426,650 + PFLU_RS01885 0.50 -1.3
426,650 + PFLU_RS01885 0.50 -2.3
426,650 + PFLU_RS01885 0.50 -0.1
426,650 + PFLU_RS01885 0.50 -0.6
426,650 + PFLU_RS01885 0.50 -1.7
426,650 + PFLU_RS01885 0.50 -0.4
426,650 + PFLU_RS01885 0.50 -0.9
426,651 - PFLU_RS01885 0.50 -0.6
426,651 - PFLU_RS01885 0.50 -0.2
426,651 - PFLU_RS01885 0.50 -0.9
426,651 - PFLU_RS01885 0.50 +0.3
426,651 - PFLU_RS01885 0.50 -0.0
426,651 - PFLU_RS01885 0.50 -1.0
426,651 - PFLU_RS01885 0.50 -0.7
426,651 - PFLU_RS01885 0.50 +0.4
426,651 - PFLU_RS01885 0.50 +1.1
426,651 - PFLU_RS01885 0.50 -0.8
426,651 - PFLU_RS01885 0.50 -0.4
426,651 - PFLU_RS01885 0.50 -2.2
426,651 - PFLU_RS01885 0.50 -0.3
426,651 - PFLU_RS01885 0.50 +1.4
426,651 - PFLU_RS01885 0.50 -1.0
426,808 - PFLU_RS01885 0.89 -0.9
426,852 + -1.3
426,852 + -1.1
426,852 + -1.2
426,852 + -0.6
426,852 + -1.9
426,852 + -0.6
426,852 + -1.9
426,853 - -0.2
426,853 - +0.1
426,853 - +0.2
426,853 - +0.7
426,853 - -1.5
426,853 - -1.2
426,915 + PFLU_RS01890 0.19 +0.1
426,915 + PFLU_RS01890 0.19 -2.3
426,916 - PFLU_RS01890 0.19 +0.1
426,916 - PFLU_RS01890 0.19 -1.0
426,916 - PFLU_RS01890 0.19 +0.2
426,916 - PFLU_RS01890 0.19 -0.6
426,916 - PFLU_RS01890 0.19 -0.9
427,020 + PFLU_RS01890 0.57 +0.7
427,084 + PFLU_RS01890 0.80 -1.5
427,084 + PFLU_RS01890 0.80 -2.3
427,085 - PFLU_RS01890 0.80 -0.9
427,085 - PFLU_RS01890 0.80 -0.9
427,090 + PFLU_RS01890 0.82 -0.7
427,091 - PFLU_RS01890 0.82 -1.2
427,305 + PFLU_RS01895 0.42 -0.6
427,305 + PFLU_RS01895 0.42 +0.7
427,305 + PFLU_RS01895 0.42 -1.9
427,305 + PFLU_RS01895 0.42 -2.5
427,306 - PFLU_RS01895 0.42 -2.0
427,413 + PFLU_RS01895 0.74 -1.7
427,413 + PFLU_RS01895 0.74 -2.6
427,413 + PFLU_RS01895 0.74 -0.8
427,413 + PFLU_RS01895 0.74 -2.6
427,414 - PFLU_RS01895 0.74 -0.4
427,428 + PFLU_RS01895 0.79 -2.5
427,428 + PFLU_RS01895 0.79 -0.6
427,428 + PFLU_RS01895 0.79 -2.0
427,428 + PFLU_RS01895 0.79 -1.1
427,428 + PFLU_RS01895 0.79 -3.0
427,428 + PFLU_RS01895 0.79 -1.0
427,428 + PFLU_RS01895 0.79 -2.0
427,428 + PFLU_RS01895 0.79 -1.8
427,429 - PFLU_RS01895 0.79 -0.1
427,429 - PFLU_RS01895 0.79 -2.3
427,429 - PFLU_RS01895 0.79 -1.9
427,429 - PFLU_RS01895 0.79 -1.6
427,429 - PFLU_RS01895 0.79 -2.9
427,429 - PFLU_RS01895 0.79 -2.0
427,517 + -1.2
427,517 + -1.2
427,517 + -1.5
427,517 + -3.0
427,517 + -1.6
427,517 + -2.6
427,518 - +0.1
427,518 - -0.2
427,518 - +0.3
427,518 - +0.7
427,518 - -0.7
427,518 - +0.5
427,583 + PFLU_RS01900 0.21 -2.0
427,583 + PFLU_RS01900 0.21 -2.2
427,583 + PFLU_RS01900 0.21 -2.4
427,584 - PFLU_RS01900 0.21 -1.2
427,584 - PFLU_RS01900 0.21 -0.6
427,584 - PFLU_RS01900 0.21 -3.6
427,584 - PFLU_RS01900 0.21 -3.1
427,584 - PFLU_RS01900 0.21 -3.0
427,745 + PFLU_RS01900 0.62 -3.7
427,745 + PFLU_RS01900 0.62 -1.1
427,745 + PFLU_RS01900 0.62 -3.8
427,745 + PFLU_RS01900 0.62 -3.2
427,745 + PFLU_RS01900 0.62 -2.2
427,745 + PFLU_RS01900 0.62 -0.7
427,746 - PFLU_RS01900 0.62 -4.3
427,746 - PFLU_RS01900 0.62 -1.7
427,746 - PFLU_RS01900 0.62 -2.0
427,746 - PFLU_RS01900 0.62 -2.7
427,746 - PFLU_RS01900 0.62 -0.6
427,746 - PFLU_RS01900 0.62 -3.0
427,746 - PFLU_RS01900 0.62 -1.5
427,746 - PFLU_RS01900 0.62 -2.1
427,746 - PFLU_RS01900 0.62 -2.9
427,746 - PFLU_RS01900 0.62 -2.5
427,746 - PFLU_RS01900 0.62 -2.7
427,746 - PFLU_RS01900 0.62 -1.1
427,826 + PFLU_RS01900 0.83 -1.4
427,826 + PFLU_RS01900 0.83 -3.1
427,826 + PFLU_RS01900 0.83 -1.7
427,826 + PFLU_RS01900 0.83 -0.3
427,826 + PFLU_RS01900 0.83 -1.5
427,826 + PFLU_RS01900 0.83 -0.1
427,826 + PFLU_RS01900 0.83 -2.9
427,826 + PFLU_RS01900 0.83 -0.9
427,827 - PFLU_RS01900 0.83 -1.2
427,827 - PFLU_RS01900 0.83 -2.4
427,827 - PFLU_RS01900 0.83 -2.5
427,827 - PFLU_RS01900 0.83 -1.1
427,827 - PFLU_RS01900 0.83 -2.9
427,827 - PFLU_RS01900 0.83 -2.6
427,827 - PFLU_RS01900 0.83 -3.0
427,827 - PFLU_RS01900 0.83 -2.6

Or see this region's nucleotide sequence