Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06379

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06378 and H281DRAFT_06379 are separated by 38 nucleotidesH281DRAFT_06379 and H281DRAFT_06380 overlap by 4 nucleotides H281DRAFT_06378: H281DRAFT_06378 - D-galactonate transporter, at 50,647 to 51,975 _06378 H281DRAFT_06379: H281DRAFT_06379 - transketolase subunit A, at 52,014 to 52,859 _06379 H281DRAFT_06380: H281DRAFT_06380 - transketolase subunit B, at 52,856 to 53,857 _06380 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 51.082 kb on + strand, within H281DRAFT_06378at 51.092 kb on - strand, within H281DRAFT_06378at 51.092 kb on - strand, within H281DRAFT_06378at 51.161 kb on + strand, within H281DRAFT_06378at 51.469 kb on + strand, within H281DRAFT_06378at 52.088 kb on - strandat 53.021 kb on + strand, within H281DRAFT_06380at 53.035 kb on + strand, within H281DRAFT_06380at 53.063 kb on + strand, within H281DRAFT_06380at 53.066 kb on + strand, within H281DRAFT_06380at 53.177 kb on + strand, within H281DRAFT_06380at 53.178 kb on - strand, within H281DRAFT_06380at 53.393 kb on + strand, within H281DRAFT_06380at 53.394 kb on - strand, within H281DRAFT_06380at 53.444 kb on + strand, within H281DRAFT_06380at 53.515 kb on + strand, within H281DRAFT_06380at 53.805 kb on - strandat 53.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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51,082 + H281DRAFT_06378 0.33 -0.0
51,092 - H281DRAFT_06378 0.33 -0.8
51,092 - H281DRAFT_06378 0.33 +1.1
51,161 + H281DRAFT_06378 0.39 +1.3
51,469 + H281DRAFT_06378 0.62 -1.8
52,088 - +0.5
53,021 + H281DRAFT_06380 0.16 +1.2
53,035 + H281DRAFT_06380 0.18 +1.3
53,063 + H281DRAFT_06380 0.21 +0.3
53,066 + H281DRAFT_06380 0.21 +5.1
53,177 + H281DRAFT_06380 0.32 +0.8
53,178 - H281DRAFT_06380 0.32 -1.6
53,393 + H281DRAFT_06380 0.54 +0.0
53,394 - H281DRAFT_06380 0.54 -0.1
53,444 + H281DRAFT_06380 0.59 +0.1
53,515 + H281DRAFT_06380 0.66 +1.9
53,805 - +2.7
53,810 - +0.1

Or see this region's nucleotide sequence