Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04761 and H281DRAFT_04762 are separated by 268 nucleotides H281DRAFT_04762 and H281DRAFT_04763 are separated by 296 nucleotides
H281DRAFT_04761: H281DRAFT_04761 - Threonine/homoserine/homoserine lactone efflux protein, at 176,358 to 176,999
_04761
H281DRAFT_04762: H281DRAFT_04762 - transcriptional regulator, LysR family, at 177,268 to 178,161
_04762
H281DRAFT_04763: H281DRAFT_04763 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 178,458 to 179,441
_04763
Position (kb) 177
178
179 Strain fitness (log2 ratio) -1
0
1
2
3 at 176.528 kb on + strand, within H281DRAFT_04761 at 176.528 kb on + strand, within H281DRAFT_04761 at 176.743 kb on + strand, within H281DRAFT_04761 at 176.839 kb on + strand, within H281DRAFT_04761 at 176.839 kb on + strand, within H281DRAFT_04761 at 176.839 kb on + strand, within H281DRAFT_04761 at 176.840 kb on - strand, within H281DRAFT_04761 at 176.840 kb on - strand, within H281DRAFT_04761 at 176.925 kb on - strand, within H281DRAFT_04761 at 177.004 kb on - strand at 177.004 kb on - strand at 177.111 kb on - strand at 177.233 kb on + strand at 177.234 kb on - strand at 177.529 kb on + strand, within H281DRAFT_04762 at 177.529 kb on - strand, within H281DRAFT_04762 at 177.635 kb on + strand, within H281DRAFT_04762 at 177.635 kb on + strand, within H281DRAFT_04762 at 177.925 kb on + strand, within H281DRAFT_04762 at 177.926 kb on - strand, within H281DRAFT_04762 at 177.926 kb on - strand, within H281DRAFT_04762 at 177.935 kb on - strand, within H281DRAFT_04762 at 178.176 kb on + strand at 178.177 kb on - strand at 178.467 kb on - strand at 178.573 kb on - strand, within H281DRAFT_04763
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 176,528 + H281DRAFT_04761 0.26 -0.4 176,528 + H281DRAFT_04761 0.26 +1.2 176,743 + H281DRAFT_04761 0.60 -1.2 176,839 + H281DRAFT_04761 0.75 -0.5 176,839 + H281DRAFT_04761 0.75 +0.3 176,839 + H281DRAFT_04761 0.75 +0.2 176,840 - H281DRAFT_04761 0.75 -0.2 176,840 - H281DRAFT_04761 0.75 -0.8 176,925 - H281DRAFT_04761 0.88 -0.8 177,004 - +0.0 177,004 - +0.1 177,111 - -0.3 177,233 + +0.1 177,234 - -1.0 177,529 + H281DRAFT_04762 0.29 +3.2 177,529 - H281DRAFT_04762 0.29 +0.3 177,635 + H281DRAFT_04762 0.41 +1.2 177,635 + H281DRAFT_04762 0.41 +0.5 177,925 + H281DRAFT_04762 0.73 +0.2 177,926 - H281DRAFT_04762 0.74 +0.3 177,926 - H281DRAFT_04762 0.74 -0.9 177,935 - H281DRAFT_04762 0.75 +0.8 178,176 + +0.7 178,177 - +0.9 178,467 - -0.4 178,573 - H281DRAFT_04763 0.12 -0.4
Or see this region's nucleotide sequence