Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03001

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03000 and H281DRAFT_03001 are separated by 386 nucleotidesH281DRAFT_03001 and H281DRAFT_03002 are separated by 74 nucleotidesH281DRAFT_03002 and H281DRAFT_03003 are separated by 10 nucleotides H281DRAFT_03000: H281DRAFT_03000 - hypothetical protein, at 23,484 to 23,909 _03000 H281DRAFT_03001: H281DRAFT_03001 - Autotransporter adhesin, at 24,296 to 27,154 _03001 H281DRAFT_03002: H281DRAFT_03002 - hypothetical protein, at 27,229 to 27,357 _03002 H281DRAFT_03003: H281DRAFT_03003 - Cyanate permease, at 27,368 to 28,771 _03003 Position (kb) 24 25 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 23.365 kb on + strandat 23.365 kb on + strandat 23.366 kb on - strandat 23.366 kb on - strandat 23.366 kb on - strandat 23.475 kb on + strandat 23.479 kb on + strandat 23.480 kb on - strandat 23.523 kb on - strandat 23.764 kb on - strand, within H281DRAFT_03000at 23.764 kb on - strandat 23.890 kb on + strandat 23.890 kb on + strandat 23.891 kb on - strandat 23.992 kb on - strandat 23.992 kb on - strandat 23.992 kb on - strandat 24.034 kb on + strandat 24.034 kb on + strandat 24.045 kb on - strandat 24.048 kb on + strandat 24.311 kb on + strandat 24.313 kb on + strandat 24.313 kb on + strandat 24.344 kb on + strandat 24.344 kb on + strandat 24.344 kb on + strandat 24.515 kb on + strandat 24.515 kb on + strandat 24.739 kb on + strand, within H281DRAFT_03001at 24.941 kb on + strand, within H281DRAFT_03001at 24.942 kb on - strand, within H281DRAFT_03001at 24.944 kb on + strand, within H281DRAFT_03001at 24.944 kb on + strand, within H281DRAFT_03001at 24.945 kb on - strand, within H281DRAFT_03001at 24.945 kb on - strand, within H281DRAFT_03001at 24.945 kb on - strand, within H281DRAFT_03001at 24.945 kb on - strand, within H281DRAFT_03001at 24.986 kb on - strand, within H281DRAFT_03001at 24.986 kb on - strand, within H281DRAFT_03001at 25.067 kb on - strand, within H281DRAFT_03001at 25.096 kb on + strandat 25.102 kb on + strand, within H281DRAFT_03001at 25.263 kb on + strand, within H281DRAFT_03001at 25.263 kb on + strand, within H281DRAFT_03001at 25.290 kb on - strand, within H281DRAFT_03001at 25.306 kb on + strand, within H281DRAFT_03001at 25.306 kb on + strand, within H281DRAFT_03001at 25.306 kb on + strand, within H281DRAFT_03001at 25.306 kb on + strand, within H281DRAFT_03001at 25.306 kb on + strand, within H281DRAFT_03001at 25.307 kb on - strand, within H281DRAFT_03001at 25.310 kb on + strand, within H281DRAFT_03001at 25.310 kb on + strand, within H281DRAFT_03001at 25.379 kb on - strand, within H281DRAFT_03001at 25.430 kb on + strand, within H281DRAFT_03001at 25.537 kb on - strand, within H281DRAFT_03001at 25.807 kb on + strand, within H281DRAFT_03001at 25.807 kb on + strand, within H281DRAFT_03001at 25.807 kb on + strand, within H281DRAFT_03001at 25.807 kb on + strand, within H281DRAFT_03001at 25.808 kb on - strand, within H281DRAFT_03001at 25.983 kb on - strand, within H281DRAFT_03001at 26.221 kb on + strand, within H281DRAFT_03001at 26.299 kb on - strand, within H281DRAFT_03001at 26.514 kb on + strand, within H281DRAFT_03001at 26.654 kb on + strand, within H281DRAFT_03001at 26.654 kb on + strand, within H281DRAFT_03001at 26.675 kb on + strand, within H281DRAFT_03001at 26.676 kb on - strand, within H281DRAFT_03001at 26.676 kb on - strand, within H281DRAFT_03001at 26.820 kb on + strand, within H281DRAFT_03001at 26.845 kb on + strand, within H281DRAFT_03001at 26.846 kb on - strand, within H281DRAFT_03001at 26.846 kb on - strand, within H281DRAFT_03001at 27.026 kb on + strandat 27.027 kb on - strandat 27.027 kb on - strandat 27.106 kb on + strandat 27.107 kb on - strandat 27.266 kb on + strand, within H281DRAFT_03002at 27.296 kb on + strand, within H281DRAFT_03002at 27.296 kb on + strand, within H281DRAFT_03002at 27.296 kb on + strand, within H281DRAFT_03002at 27.297 kb on - strand, within H281DRAFT_03002at 27.369 kb on + strandat 27.370 kb on - strandat 27.537 kb on + strand, within H281DRAFT_03003at 27.640 kb on - strand, within H281DRAFT_03003at 27.669 kb on + strand, within H281DRAFT_03003at 27.670 kb on - strand, within H281DRAFT_03003at 27.690 kb on + strand, within H281DRAFT_03003at 27.690 kb on + strand, within H281DRAFT_03003at 27.747 kb on + strand, within H281DRAFT_03003at 27.747 kb on + strand, within H281DRAFT_03003at 27.748 kb on - strand, within H281DRAFT_03003at 27.748 kb on - strand, within H281DRAFT_03003at 27.780 kb on + strand, within H281DRAFT_03003at 27.780 kb on + strand, within H281DRAFT_03003at 27.780 kb on + strand, within H281DRAFT_03003at 27.781 kb on - strand, within H281DRAFT_03003at 27.985 kb on - strand, within H281DRAFT_03003at 27.985 kb on - strand, within H281DRAFT_03003at 28.138 kb on - strand, within H281DRAFT_03003

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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23,365 + +0.5
23,365 + -1.8
23,366 - -0.7
23,366 - -0.2
23,366 - -0.0
23,475 + -0.6
23,479 + +0.6
23,480 - -0.8
23,523 - -0.0
23,764 - H281DRAFT_03000 0.66 -0.3
23,764 - -0.3
23,890 + -0.8
23,890 + +0.9
23,891 - -0.1
23,992 - +0.6
23,992 - +0.7
23,992 - +0.4
24,034 + +0.3
24,034 + -0.2
24,045 - +0.3
24,048 + +1.7
24,311 + -0.4
24,313 + -0.9
24,313 + -0.3
24,344 + -0.9
24,344 + +0.1
24,344 + -1.0
24,515 + -1.3
24,515 + -0.8
24,739 + H281DRAFT_03001 0.15 +0.8
24,941 + H281DRAFT_03001 0.23 -0.0
24,942 - H281DRAFT_03001 0.23 -0.3
24,944 + H281DRAFT_03001 0.23 +0.6
24,944 + H281DRAFT_03001 0.23 -0.2
24,945 - H281DRAFT_03001 0.23 +0.7
24,945 - H281DRAFT_03001 0.23 +1.0
24,945 - H281DRAFT_03001 0.23 +0.1
24,945 - H281DRAFT_03001 0.23 +1.0
24,986 - H281DRAFT_03001 0.24 -1.0
24,986 - H281DRAFT_03001 0.24 +0.5
25,067 - H281DRAFT_03001 0.27 +1.9
25,096 + +3.8
25,102 + H281DRAFT_03001 0.28 +0.9
25,263 + H281DRAFT_03001 0.34 -0.0
25,263 + H281DRAFT_03001 0.34 -0.4
25,290 - H281DRAFT_03001 0.35 -2.5
25,306 + H281DRAFT_03001 0.35 +0.8
25,306 + H281DRAFT_03001 0.35 +0.7
25,306 + H281DRAFT_03001 0.35 -0.6
25,306 + H281DRAFT_03001 0.35 +0.2
25,306 + H281DRAFT_03001 0.35 +0.1
25,307 - H281DRAFT_03001 0.35 +0.1
25,310 + H281DRAFT_03001 0.35 -1.3
25,310 + H281DRAFT_03001 0.35 +0.3
25,379 - H281DRAFT_03001 0.38 +1.6
25,430 + H281DRAFT_03001 0.40 -0.1
25,537 - H281DRAFT_03001 0.43 -0.2
25,807 + H281DRAFT_03001 0.53 +0.6
25,807 + H281DRAFT_03001 0.53 -0.0
25,807 + H281DRAFT_03001 0.53 +0.9
25,807 + H281DRAFT_03001 0.53 -2.3
25,808 - H281DRAFT_03001 0.53 -0.3
25,983 - H281DRAFT_03001 0.59 +0.2
26,221 + H281DRAFT_03001 0.67 -0.5
26,299 - H281DRAFT_03001 0.70 +0.1
26,514 + H281DRAFT_03001 0.78 -0.8
26,654 + H281DRAFT_03001 0.82 -0.7
26,654 + H281DRAFT_03001 0.82 +0.0
26,675 + H281DRAFT_03001 0.83 -0.3
26,676 - H281DRAFT_03001 0.83 -0.4
26,676 - H281DRAFT_03001 0.83 -2.6
26,820 + H281DRAFT_03001 0.88 -0.3
26,845 + H281DRAFT_03001 0.89 +0.3
26,846 - H281DRAFT_03001 0.89 -0.0
26,846 - H281DRAFT_03001 0.89 +0.2
27,026 + -0.5
27,027 - +0.5
27,027 - +0.5
27,106 + -0.3
27,107 - +0.2
27,266 + H281DRAFT_03002 0.29 +2.1
27,296 + H281DRAFT_03002 0.52 -0.0
27,296 + H281DRAFT_03002 0.52 +0.2
27,296 + H281DRAFT_03002 0.52 -0.5
27,297 - H281DRAFT_03002 0.53 -1.0
27,369 + -0.2
27,370 - -0.8
27,537 + H281DRAFT_03003 0.12 -0.0
27,640 - H281DRAFT_03003 0.19 +1.5
27,669 + H281DRAFT_03003 0.21 +1.0
27,670 - H281DRAFT_03003 0.22 +0.7
27,690 + H281DRAFT_03003 0.23 +0.3
27,690 + H281DRAFT_03003 0.23 -0.1
27,747 + H281DRAFT_03003 0.27 +0.8
27,747 + H281DRAFT_03003 0.27 -0.6
27,748 - H281DRAFT_03003 0.27 -0.9
27,748 - H281DRAFT_03003 0.27 -1.4
27,780 + H281DRAFT_03003 0.29 +0.1
27,780 + H281DRAFT_03003 0.29 -0.2
27,780 + H281DRAFT_03003 0.29 +3.2
27,781 - H281DRAFT_03003 0.29 +0.2
27,985 - H281DRAFT_03003 0.44 -1.0
27,985 - H281DRAFT_03003 0.44 -1.0
28,138 - H281DRAFT_03003 0.55 +0.5

Or see this region's nucleotide sequence