Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03065

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03060 and RR42_RS03065 are separated by 264 nucleotidesRR42_RS03065 and RR42_RS03070 overlap by 4 nucleotides RR42_RS03060: RR42_RS03060 - MFS transporter, at 676,450 to 678,150 _RS03060 RR42_RS03065: RR42_RS03065 - membrane protein, at 678,415 to 678,732 _RS03065 RR42_RS03070: RR42_RS03070 - histidine kinase, at 678,729 to 680,285 _RS03070 Position (kb) 678 679Strain fitness (log2 ratio) -2 -1 0 1at 677.507 kb on + strand, within RR42_RS03060at 677.508 kb on - strand, within RR42_RS03060at 677.508 kb on - strand, within RR42_RS03060at 677.508 kb on - strand, within RR42_RS03060at 677.660 kb on + strand, within RR42_RS03060at 677.660 kb on + strand, within RR42_RS03060at 677.660 kb on + strand, within RR42_RS03060at 677.660 kb on + strand, within RR42_RS03060at 677.661 kb on - strand, within RR42_RS03060at 677.661 kb on - strand, within RR42_RS03060at 677.661 kb on - strand, within RR42_RS03060at 677.699 kb on + strand, within RR42_RS03060at 677.699 kb on + strand, within RR42_RS03060at 677.700 kb on - strand, within RR42_RS03060at 677.700 kb on - strand, within RR42_RS03060at 677.700 kb on - strand, within RR42_RS03060at 677.861 kb on + strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 678.264 kb on - strandat 678.298 kb on + strandat 678.313 kb on + strandat 678.313 kb on + strandat 678.313 kb on + strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.416 kb on + strandat 678.416 kb on + strandat 678.417 kb on - strandat 678.497 kb on + strand, within RR42_RS03065at 678.497 kb on + strand, within RR42_RS03065at 678.497 kb on + strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.519 kb on - strand, within RR42_RS03065at 678.635 kb on - strand, within RR42_RS03065at 678.806 kb on - strandat 678.806 kb on - strandat 678.911 kb on - strand, within RR42_RS03070at 678.979 kb on + strand, within RR42_RS03070at 679.043 kb on - strand, within RR42_RS03070at 679.418 kb on + strand, within RR42_RS03070

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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677,507 + RR42_RS03060 0.62 -0.6
677,508 - RR42_RS03060 0.62 -1.1
677,508 - RR42_RS03060 0.62 -0.2
677,508 - RR42_RS03060 0.62 -1.1
677,660 + RR42_RS03060 0.71 -0.6
677,660 + RR42_RS03060 0.71 -0.6
677,660 + RR42_RS03060 0.71 -0.4
677,660 + RR42_RS03060 0.71 -1.2
677,661 - RR42_RS03060 0.71 -0.7
677,661 - RR42_RS03060 0.71 -0.9
677,661 - RR42_RS03060 0.71 -0.5
677,699 + RR42_RS03060 0.73 +0.4
677,699 + RR42_RS03060 0.73 +0.1
677,700 - RR42_RS03060 0.73 -0.9
677,700 - RR42_RS03060 0.73 -2.6
677,700 - RR42_RS03060 0.73 -0.9
677,861 + RR42_RS03060 0.83 -1.2
677,862 - RR42_RS03060 0.83 +1.2
677,862 - RR42_RS03060 0.83 -0.3
677,862 - RR42_RS03060 0.83 +0.9
677,862 - RR42_RS03060 0.83 -0.6
678,264 - -0.1
678,298 + -0.2
678,313 + +0.7
678,313 + -1.1
678,313 + +0.7
678,314 - +0.3
678,314 - +0.1
678,314 - -0.4
678,416 + -0.4
678,416 + -0.0
678,417 - -0.3
678,497 + RR42_RS03065 0.26 -1.1
678,497 + RR42_RS03065 0.26 +0.0
678,497 + RR42_RS03065 0.26 -1.9
678,498 - RR42_RS03065 0.26 -0.0
678,498 - RR42_RS03065 0.26 +0.6
678,498 - RR42_RS03065 0.26 -0.6
678,498 - RR42_RS03065 0.26 -0.4
678,498 - RR42_RS03065 0.26 +0.7
678,498 - RR42_RS03065 0.26 -0.0
678,519 - RR42_RS03065 0.33 -1.8
678,635 - RR42_RS03065 0.69 -0.6
678,806 - -0.4
678,806 - -0.9
678,911 - RR42_RS03070 0.12 -1.5
678,979 + RR42_RS03070 0.16 -1.8
679,043 - RR42_RS03070 0.20 +0.1
679,418 + RR42_RS03070 0.44 -0.7

Or see this region's nucleotide sequence