Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24555

Experiment: malate (C) and Ammonium chloride (N); with TAPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS; with PEG
5,501,851	+				-1.0
5,501,896	+				+1.2
5,501,897	-				-1.7
5,501,944	-				+1.8
5,501,944	-				+0.4
5,501,944	-				+0.4
5,501,987	-				-0.3
5,501,987	-				-0.6
5,501,987	-				-1.0
5,502,002	+				+0.2
5,502,002	+				+0.4
5,502,002	+				+1.1
5,502,003	-				+0.2
5,502,044	+				-0.7
5,502,044	+				+0.4
5,502,044	+				+0.2
5,502,133	-		PFLU_RS24555	0.12	-0.8
5,502,259	+		PFLU_RS24555	0.30	-1.2
5,502,259	+		PFLU_RS24555	0.30	-0.6
5,502,259	+		PFLU_RS24555	0.30	-0.0
5,502,259	+		PFLU_RS24555	0.30	+0.2
5,502,260	-		PFLU_RS24555	0.30	-0.2
5,502,260	-		PFLU_RS24555	0.30	+0.8
5,502,260	-		PFLU_RS24555	0.30	-0.8
5,502,313	+		PFLU_RS24555	0.37	-0.6
5,502,313	+		PFLU_RS24555	0.37	+1.8
5,502,313	+		PFLU_RS24555	0.37	-1.0
5,502,313	+		PFLU_RS24555	0.37	+1.8
5,502,313	+		PFLU_RS24555	0.37	-1.6
5,502,313	+		PFLU_RS24555	0.37	+0.8
5,502,313	+		PFLU_RS24555	0.37	+0.4
5,502,313	+		PFLU_RS24555	0.37	-1.0
5,502,313	+		PFLU_RS24555	0.37	+1.4
5,502,313	+		PFLU_RS24555	0.37	+0.2
5,502,314	-		PFLU_RS24555	0.37	-0.8
5,502,314	-		PFLU_RS24555	0.37	+0.2
5,502,314	-		PFLU_RS24555	0.37	-0.6
5,502,314	-		PFLU_RS24555	0.37	+0.0
5,502,314	-		PFLU_RS24555	0.37	+0.2
5,502,314	-		PFLU_RS24555	0.37	-0.2
5,502,314	-		PFLU_RS24555	0.37	-1.0
5,502,314	-		PFLU_RS24555	0.37	+0.2
5,502,314	-		PFLU_RS24555	0.37	+0.5
5,502,314	-		PFLU_RS24555	0.37	-1.6
5,502,314	-		PFLU_RS24555	0.37	-0.2
5,502,314	-		PFLU_RS24555	0.37	-1.0
5,502,317	+		PFLU_RS24555	0.37	+0.2
5,502,317	+		PFLU_RS24555	0.37	+0.8
5,502,317	+		PFLU_RS24555	0.37	-0.2
5,502,317	+		PFLU_RS24555	0.37	-0.6
5,502,317	+		PFLU_RS24555	0.37	-1.0
5,502,317	+		PFLU_RS24555	0.37	-1.7
5,502,317	+		PFLU_RS24555	0.37	-0.8
5,502,317	+		PFLU_RS24555	0.37	-0.8
5,502,318	-		PFLU_RS24555	0.38	-0.6
5,502,318	-		PFLU_RS24555	0.38	+0.8
5,502,318	-		PFLU_RS24555	0.38	+0.2
5,502,318	-		PFLU_RS24555	0.38	-1.0
5,502,318	-		PFLU_RS24555	0.38	+0.8
5,502,318	-		PFLU_RS24555	0.38	+1.8
5,502,322	+		PFLU_RS24555	0.38	-1.7
5,502,322	+		PFLU_RS24555	0.38	-1.0
5,502,322	+		PFLU_RS24555	0.38	+1.8
5,502,322	+		PFLU_RS24555	0.38	+0.2
5,502,322	+		PFLU_RS24555	0.38	-0.2
5,502,322	+		PFLU_RS24555	0.38	+1.8
5,502,322	+		PFLU_RS24555	0.38	+0.4
5,502,322	+		PFLU_RS24555	0.38	+0.2
5,502,322	+		PFLU_RS24555	0.38	+0.8
5,502,322	+		PFLU_RS24555	0.38	+0.8
5,502,322	+		PFLU_RS24555	0.38	+0.2
5,502,322	+		PFLU_RS24555	0.38	-0.2
5,502,322	+		PFLU_RS24555	0.38	+1.8
5,502,322	+		PFLU_RS24555	0.38	+0.2
5,502,322	+		PFLU_RS24555	0.38	-0.6
5,502,322	+		PFLU_RS24555	0.38	+0.8
5,502,322	+		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	+0.2
5,502,323	-		PFLU_RS24555	0.38	-1.2
5,502,323	-		PFLU_RS24555	0.38	+2.8
5,502,323	-		PFLU_RS24555	0.38	-0.2
5,502,323	-		PFLU_RS24555	0.38	+0.2
5,502,323	-		PFLU_RS24555	0.38	-0.9
5,502,323	-		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	-1.6
5,502,323	-		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	+1.8
5,502,323	-		PFLU_RS24555	0.38	-0.2
5,502,323	-		PFLU_RS24555	0.38	+0.2
5,502,323	-		PFLU_RS24555	0.38	-1.7
5,502,323	-		PFLU_RS24555	0.38	-0.8
5,502,323	-		PFLU_RS24555	0.38	+1.2
5,502,323	-		PFLU_RS24555	0.38	-1.8
5,502,323	-		PFLU_RS24555	0.38	-0.2
5,502,323	-		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	+1.8
5,502,323	-		PFLU_RS24555	0.38	+1.8
5,502,323	-		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	+0.2
5,502,323	-		PFLU_RS24555	0.38	-0.8
5,502,377	+		PFLU_RS24555	0.46	+0.2
5,502,377	+		PFLU_RS24555	0.46	+0.2
5,502,437	+		PFLU_RS24555	0.54	+0.2
5,502,437	+		PFLU_RS24555	0.54	+0.8
5,502,437	+		PFLU_RS24555	0.54	+0.4
5,502,438	-		PFLU_RS24555	0.54	+1.2
5,502,545	+		PFLU_RS24555	0.69	-0.2
5,502,560	+		PFLU_RS24555	0.71	+0.8
5,502,560	+		PFLU_RS24555	0.71	+0.2
5,502,560	+		PFLU_RS24555	0.71	-0.2
5,502,560	+		PFLU_RS24555	0.71	-1.4
5,502,560	+		PFLU_RS24555	0.71	+0.8
5,502,561	-		PFLU_RS24555	0.71	+1.8
5,502,561	-		PFLU_RS24555	0.71	+0.2
5,502,561	-		PFLU_RS24555	0.71	-0.0
5,502,561	-		PFLU_RS24555	0.71	-0.2
5,502,581	+		PFLU_RS24555	0.73	-1.7
5,502,581	+		PFLU_RS24555	0.73	+0.2
5,502,581	+		PFLU_RS24555	0.73	-0.8
5,502,581	+		PFLU_RS24555	0.73	-1.8
5,502,582	-		PFLU_RS24555	0.74	-0.8
5,502,582	-		PFLU_RS24555	0.74	-1.1
5,502,582	-		PFLU_RS24555	0.74	-0.2
5,502,614	+		PFLU_RS24555	0.78	+1.8
5,502,614	+		PFLU_RS24555	0.78	+1.8
5,502,614	+		PFLU_RS24555	0.78	-1.0
5,502,614	+		PFLU_RS24555	0.78	+0.2
5,502,615	-		PFLU_RS24555	0.78	+1.8
5,502,615	-		PFLU_RS24555	0.78	-0.2
5,502,615	-		PFLU_RS24555	0.78	-1.0
5,502,615	-		PFLU_RS24555	0.78	+0.8
5,502,756	+				-0.8
5,502,756	+				+1.8
5,502,812	+				-0.2
5,502,813	-				+0.9
5,502,867	-				-0.6
5,502,867	-				+0.2
5,502,867	-				-0.0
5,502,945	+				-0.4
5,502,946	-				+0.2
5,502,977	+				+0.9
5,502,977	+				+0.4
5,502,977	+				+1.4
5,502,977	+				-0.5
5,502,977	+				-0.0
5,502,977	+				+0.2
5,502,977	+				+0.5
5,502,977	+				+3.8
5,502,978	-				-0.9
5,502,978	-				+0.8
5,502,978	-				-1.1
5,502,994	+				+0.0
5,502,994	+				-1.5
5,502,994	+				-0.7
5,502,995	-				-1.7
5,503,233	+		PFLU_RS24560	0.35	-2.4
5,503,233	+		PFLU_RS24560	0.35	-0.1
5,503,233	+		PFLU_RS24560	0.35	-0.4
5,503,234	-		PFLU_RS24560	0.35	+2.2
5,503,234	-		PFLU_RS24560	0.35	-1.3
5,503,234	-		PFLU_RS24560	0.35	-0.6
5,503,235	+		PFLU_RS24560	0.36	+0.6
5,503,235	+		PFLU_RS24560	0.36	-1.8
5,503,235	+		PFLU_RS24560	0.36	-0.5
5,503,235	+		PFLU_RS24560	0.36	-0.2
5,503,235	+		PFLU_RS24560	0.36	-1.2
5,503,235	+		PFLU_RS24560	0.36	-1.4
5,503,235	+		PFLU_RS24560	0.36	+0.2
5,503,235	+		PFLU_RS24560	0.36	-1.0
5,503,235	+		PFLU_RS24560	0.36	-0.2
5,503,235	+		PFLU_RS24560	0.36	-1.0
5,503,235	+		PFLU_RS24560	0.36	-1.8
5,503,235	+		PFLU_RS24560	0.36	+0.8
5,503,235	+		PFLU_RS24560	0.36	-0.3
5,503,235	+		PFLU_RS24560	0.36	-0.3
5,503,236	-		PFLU_RS24560	0.36	+0.8
5,503,236	-		PFLU_RS24560	0.36	-0.4
5,503,236	-		PFLU_RS24560	0.36	-0.6
5,503,236	-		PFLU_RS24560	0.36	+0.4
5,503,236	-		PFLU_RS24560	0.36	+0.3
5,503,236	-		PFLU_RS24560	0.36	+0.9
5,503,236	-		PFLU_RS24560	0.36	-0.3
5,503,236	-		PFLU_RS24560	0.36	-0.6
5,503,236	-		PFLU_RS24560	0.36	-1.2
5,503,236	-		PFLU_RS24560	0.36	+1.1
5,503,236	-		PFLU_RS24560	0.36	-1.0
5,503,236	-		PFLU_RS24560	0.36	-0.2
5,503,236	-		PFLU_RS24560	0.36	-0.4
5,503,303	+		PFLU_RS24560	0.43	-0.9
5,503,304	-		PFLU_RS24560	0.43	-0.4
5,503,382	+		PFLU_RS24560	0.52	+0.1
5,503,382	+		PFLU_RS24560	0.52	+0.9
5,503,382	+		PFLU_RS24560	0.52	-0.1
5,503,382	+		PFLU_RS24560	0.52	+0.2
5,503,382	+		PFLU_RS24560	0.52	-0.8
5,503,382	+		PFLU_RS24560	0.52	-0.1
5,503,382	+		PFLU_RS24560	0.52	-1.3
5,503,382	+		PFLU_RS24560	0.52	-2.0
5,503,382	+		PFLU_RS24560	0.52	-0.7
5,503,382	+		PFLU_RS24560	0.52	-0.6
5,503,382	+		PFLU_RS24560	0.52	+0.4
5,503,382	+		PFLU_RS24560	0.52	-0.1
5,503,382	+		PFLU_RS24560	0.52	-0.4
5,503,382	+		PFLU_RS24560	0.52	-0.0
5,503,382	+		PFLU_RS24560	0.52	-0.4
5,503,383	-		PFLU_RS24560	0.52	-0.3
5,503,383	-		PFLU_RS24560	0.52	-2.8
5,503,383	-		PFLU_RS24560	0.52	-0.7
5,503,383	-		PFLU_RS24560	0.52	-0.3
5,503,383	-		PFLU_RS24560	0.52	-0.5
5,503,383	-		PFLU_RS24560	0.52	-0.6
5,503,383	-		PFLU_RS24560	0.52	-1.4
5,503,383	-		PFLU_RS24560	0.52	-0.3
5,503,383	-		PFLU_RS24560	0.52	-2.2
5,503,383	-		PFLU_RS24560	0.52	-0.9
5,503,383	-		PFLU_RS24560	0.52	-0.8
5,503,383	-		PFLU_RS24560	0.52	-0.3
5,503,556	+		PFLU_RS24560	0.71	-0.5
5,503,556	+		PFLU_RS24560	0.71	+0.9
5,503,557	-		PFLU_RS24560	0.71	+0.6
5,503,562	+		PFLU_RS24560	0.72	+0.8
5,503,563	-		PFLU_RS24560	0.72	-1.5
5,503,563	-		PFLU_RS24560	0.72	-1.0
5,503,563	-		PFLU_RS24560	0.72	-2.0
5,503,610	+		PFLU_RS24560	0.77	+0.4
5,503,611	-		PFLU_RS24560	0.77	+0.2
5,503,611	-		PFLU_RS24560	0.77	-0.2
5,503,611	-		PFLU_RS24560	0.77	+1.0
5,503,611	-		PFLU_RS24560	0.77	+0.1
5,503,724	+				-1.9
5,503,725	-				-0.6