Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05396 and H281DRAFT_05397 are separated by 20 nucleotides H281DRAFT_05397 and H281DRAFT_05398 are separated by 436 nucleotides
H281DRAFT_05396: H281DRAFT_05396 - lipoprotein NlpD, at 158,925 to 159,857
_05396
H281DRAFT_05397: H281DRAFT_05397 - Pimeloyl-ACP methyl ester carboxylesterase, at 159,878 to 160,705
_05397
H281DRAFT_05398: H281DRAFT_05398 - hypothetical protein, at 161,142 to 161,540
_05398
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 158.908 kb on + strand at 158.908 kb on + strand at 158.908 kb on + strand at 158.908 kb on + strand at 158.909 kb on - strand at 159.157 kb on - strand, within H281DRAFT_05396 at 159.348 kb on - strand, within H281DRAFT_05396 at 159.556 kb on + strand, within H281DRAFT_05396 at 159.616 kb on - strand, within H281DRAFT_05396 at 159.616 kb on - strand, within H281DRAFT_05396 at 159.687 kb on + strand, within H281DRAFT_05396 at 160.101 kb on + strand, within H281DRAFT_05397 at 160.174 kb on - strand, within H281DRAFT_05397 at 160.224 kb on + strand, within H281DRAFT_05397 at 160.225 kb on - strand, within H281DRAFT_05397 at 160.591 kb on - strand, within H281DRAFT_05397 at 160.591 kb on - strand, within H281DRAFT_05397 at 160.591 kb on - strand, within H281DRAFT_05397 at 160.591 kb on - strand, within H281DRAFT_05397 at 160.614 kb on - strand, within H281DRAFT_05397 at 160.614 kb on - strand, within H281DRAFT_05397 at 160.676 kb on - strand at 160.676 kb on - strand at 160.677 kb on + strand at 160.678 kb on - strand at 160.783 kb on + strand at 160.784 kb on - strand at 161.053 kb on + strand at 161.053 kb on + strand at 161.073 kb on + strand at 161.073 kb on + strand at 161.073 kb on + strand at 161.135 kb on - strand at 161.135 kb on - strand at 161.143 kb on + strand at 161.227 kb on + strand, within H281DRAFT_05398 at 161.478 kb on - strand, within H281DRAFT_05398 at 161.654 kb on + strand at 161.654 kb on + strand at 161.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 158,908 + +0.6 158,908 + +0.9 158,908 + -0.8 158,908 + +0.3 158,909 - +1.0 159,157 - H281DRAFT_05396 0.25 -0.4 159,348 - H281DRAFT_05396 0.45 +1.0 159,556 + H281DRAFT_05396 0.68 -0.7 159,616 - H281DRAFT_05396 0.74 +1.3 159,616 - H281DRAFT_05396 0.74 +0.4 159,687 + H281DRAFT_05396 0.82 -0.1 160,101 + H281DRAFT_05397 0.27 +0.8 160,174 - H281DRAFT_05397 0.36 +1.0 160,224 + H281DRAFT_05397 0.42 -1.0 160,225 - H281DRAFT_05397 0.42 -0.1 160,591 - H281DRAFT_05397 0.86 -0.1 160,591 - H281DRAFT_05397 0.86 -0.0 160,591 - H281DRAFT_05397 0.86 -3.5 160,591 - H281DRAFT_05397 0.86 +0.9 160,614 - H281DRAFT_05397 0.89 +0.6 160,614 - H281DRAFT_05397 0.89 +0.2 160,676 - +0.6 160,676 - -0.0 160,677 + -0.6 160,678 - -1.5 160,783 + +0.2 160,784 - +0.3 161,053 + -0.2 161,053 + +0.7 161,073 + +0.7 161,073 + -2.6 161,073 + -1.2 161,135 - -0.7 161,135 - -1.7 161,143 + +1.1 161,227 + H281DRAFT_05398 0.21 -0.1 161,478 - H281DRAFT_05398 0.84 -0.2 161,654 + +1.2 161,654 + -0.9 161,655 - -0.6
Or see this region's nucleotide sequence