Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05190 and H281DRAFT_05191 are separated by 107 nucleotides H281DRAFT_05191 and H281DRAFT_05192 are separated by 146 nucleotides
H281DRAFT_05190: H281DRAFT_05190 - transcriptional regulator, TetR family, at 146,734 to 147,468
_05190
H281DRAFT_05191: H281DRAFT_05191 - Tetratricopeptide repeat-containing protein, at 147,576 to 148,811
_05191
H281DRAFT_05192: H281DRAFT_05192 - phage shock protein A (PspA) family protein, at 148,958 to 149,638
_05192
Position (kb) 147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 146.681 kb on - strand at 146.681 kb on - strand at 146.681 kb on - strand at 146.690 kb on - strand at 146.914 kb on + strand, within H281DRAFT_05190 at 146.914 kb on + strand, within H281DRAFT_05190 at 147.522 kb on + strand at 147.523 kb on - strand at 147.577 kb on + strand at 148.092 kb on + strand, within H281DRAFT_05191 at 148.167 kb on + strand, within H281DRAFT_05191 at 148.613 kb on - strand, within H281DRAFT_05191 at 148.618 kb on + strand, within H281DRAFT_05191 at 148.619 kb on - strand, within H281DRAFT_05191 at 148.750 kb on - strand at 148.750 kb on - strand at 149.428 kb on - strand, within H281DRAFT_05192 at 149.607 kb on - strand at 149.773 kb on + strand at 149.810 kb on + strand at 149.811 kb on - strand at 149.811 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 146,681 - +0.6 146,681 - +0.7 146,681 - -0.4 146,690 - +0.1 146,914 + H281DRAFT_05190 0.24 -1.4 146,914 + H281DRAFT_05190 0.24 -0.9 147,522 + +0.2 147,523 - -1.1 147,577 + -2.9 148,092 + H281DRAFT_05191 0.42 -0.0 148,167 + H281DRAFT_05191 0.48 -0.8 148,613 - H281DRAFT_05191 0.84 +1.8 148,618 + H281DRAFT_05191 0.84 -1.0 148,619 - H281DRAFT_05191 0.84 +0.2 148,750 - +0.7 148,750 - +0.8 149,428 - H281DRAFT_05192 0.69 -0.2 149,607 - -0.0 149,773 + -0.8 149,810 + -0.0 149,811 - -0.7 149,811 - +0.5
Or see this region's nucleotide sequence