Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04719 and H281DRAFT_04720 are separated by 137 nucleotides H281DRAFT_04720 and H281DRAFT_04721 overlap by 4 nucleotides H281DRAFT_04721 and H281DRAFT_04722 are separated by 10 nucleotides
H281DRAFT_04719: H281DRAFT_04719 - TolB protein, at 131,590 to 132,882
_04719
H281DRAFT_04720: H281DRAFT_04720 - Cell division and transport-associated protein TolA, at 133,020 to 134,048
_04720
H281DRAFT_04721: H281DRAFT_04721 - Cell division and transport-associated protein TolR, at 134,045 to 134,491
_04721
H281DRAFT_04722: H281DRAFT_04722 - Cell division and transport-associated protein TolQ, at 134,502 to 135,179
_04722
Position (kb) 133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.216 kb on - strand, within H281DRAFT_04719 at 132.248 kb on + strand, within H281DRAFT_04719 at 132.381 kb on - strand, within H281DRAFT_04719 at 132.428 kb on + strand, within H281DRAFT_04719 at 132.430 kb on + strand, within H281DRAFT_04719 at 132.430 kb on + strand, within H281DRAFT_04719 at 132.431 kb on - strand, within H281DRAFT_04719 at 132.888 kb on - strand at 132.914 kb on + strand at 132.951 kb on - strand at 133.005 kb on - strand at 133.939 kb on + strand, within H281DRAFT_04720 at 133.939 kb on + strand, within H281DRAFT_04720 at 134.124 kb on + strand, within H281DRAFT_04721 at 134.415 kb on + strand, within H281DRAFT_04721 at 134.504 kb on - strand at 134.596 kb on + strand, within H281DRAFT_04722 at 134.596 kb on + strand, within H281DRAFT_04722 at 134.596 kb on + strand, within H281DRAFT_04722 at 134.597 kb on - strand at 134.597 kb on - strand, within H281DRAFT_04722 at 134.597 kb on - strand at 134.597 kb on - strand, within H281DRAFT_04722 at 134.753 kb on + strand, within H281DRAFT_04722 at 134.754 kb on - strand, within H281DRAFT_04722 at 134.755 kb on + strand, within H281DRAFT_04722 at 134.756 kb on - strand, within H281DRAFT_04722 at 134.975 kb on - strand at 134.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 132,216 - H281DRAFT_04719 0.48 -1.1 132,248 + H281DRAFT_04719 0.51 -0.1 132,381 - H281DRAFT_04719 0.61 -1.1 132,428 + H281DRAFT_04719 0.65 +0.9 132,430 + H281DRAFT_04719 0.65 -1.6 132,430 + H281DRAFT_04719 0.65 +0.9 132,431 - H281DRAFT_04719 0.65 -0.1 132,888 - +0.3 132,914 + -1.1 132,951 - +0.7 133,005 - -0.1 133,939 + H281DRAFT_04720 0.89 -0.6 133,939 + H281DRAFT_04720 0.89 -1.6 134,124 + H281DRAFT_04721 0.18 -2.4 134,415 + H281DRAFT_04721 0.83 -0.6 134,504 - +2.7 134,596 + H281DRAFT_04722 0.14 -1.1 134,596 + H281DRAFT_04722 0.14 -0.1 134,596 + H281DRAFT_04722 0.14 -2.6 134,597 - -0.1 134,597 - H281DRAFT_04722 0.14 -1.9 134,597 - -0.1 134,597 - H281DRAFT_04722 0.14 -1.9 134,753 + H281DRAFT_04722 0.37 -2.1 134,754 - H281DRAFT_04722 0.37 +0.9 134,755 + H281DRAFT_04722 0.37 -1.9 134,756 - H281DRAFT_04722 0.37 +0.9 134,975 - -0.1 134,975 - +0.9
Or see this region's nucleotide sequence