Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04417 and H281DRAFT_04418 are separated by 93 nucleotides H281DRAFT_04418 and H281DRAFT_04419 are separated by 181 nucleotides
H281DRAFT_04417: H281DRAFT_04417 - two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR, at 135,818 to 137,131
_04417
H281DRAFT_04418: H281DRAFT_04418 - polyphosphate kinase, at 137,225 to 139,288
_04418
H281DRAFT_04419: H281DRAFT_04419 - Ppx/GppA phosphatase, at 139,470 to 141,116
_04419
Position (kb) 137
138
139
140 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 136.298 kb on + strand, within H281DRAFT_04417 at 136.371 kb on - strand, within H281DRAFT_04417 at 136.820 kb on + strand, within H281DRAFT_04417 at 136.822 kb on + strand, within H281DRAFT_04417 at 136.823 kb on - strand at 137.096 kb on + strand at 137.178 kb on + strand at 137.181 kb on - strand at 137.182 kb on + strand at 137.182 kb on + strand at 137.183 kb on - strand at 137.183 kb on - strand at 137.183 kb on - strand at 137.186 kb on + strand at 137.187 kb on - strand at 137.457 kb on + strand, within H281DRAFT_04418 at 137.458 kb on - strand, within H281DRAFT_04418 at 137.481 kb on + strand, within H281DRAFT_04418 at 137.487 kb on + strand, within H281DRAFT_04418 at 137.487 kb on + strand, within H281DRAFT_04418 at 137.488 kb on - strand, within H281DRAFT_04418 at 137.488 kb on - strand, within H281DRAFT_04418 at 137.488 kb on - strand, within H281DRAFT_04418 at 137.630 kb on + strand, within H281DRAFT_04418 at 137.631 kb on - strand, within H281DRAFT_04418 at 137.769 kb on - strand, within H281DRAFT_04418 at 137.874 kb on + strand, within H281DRAFT_04418 at 137.898 kb on + strand, within H281DRAFT_04418 at 137.899 kb on - strand, within H281DRAFT_04418 at 137.922 kb on + strand, within H281DRAFT_04418 at 138.009 kb on + strand, within H281DRAFT_04418 at 138.249 kb on + strand, within H281DRAFT_04418 at 138.420 kb on + strand, within H281DRAFT_04418 at 138.903 kb on + strand, within H281DRAFT_04418 at 139.009 kb on - strand, within H281DRAFT_04418 at 139.009 kb on - strand, within H281DRAFT_04418 at 139.313 kb on + strand at 139.349 kb on - strand at 139.363 kb on - strand at 139.381 kb on + strand at 139.388 kb on + strand at 139.416 kb on - strand at 139.416 kb on - strand at 139.416 kb on - strand at 139.487 kb on + strand at 139.488 kb on - strand at 139.488 kb on - strand at 139.488 kb on - strand at 139.488 kb on - strand at 139.613 kb on + strand at 139.613 kb on + strand at 140.217 kb on + strand, within H281DRAFT_04419 at 140.218 kb on - strand, within H281DRAFT_04419
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 136,298 + H281DRAFT_04417 0.37 +1.0 136,371 - H281DRAFT_04417 0.42 -0.7 136,820 + H281DRAFT_04417 0.76 +0.3 136,822 + H281DRAFT_04417 0.76 -0.0 136,823 - +0.2 137,096 + +0.8 137,178 + -0.8 137,181 - -0.1 137,182 + -0.7 137,182 + -0.4 137,183 - -0.9 137,183 - +0.3 137,183 - +0.1 137,186 + -0.6 137,187 - +0.8 137,457 + H281DRAFT_04418 0.11 -1.9 137,458 - H281DRAFT_04418 0.11 +1.0 137,481 + H281DRAFT_04418 0.12 +1.0 137,487 + H281DRAFT_04418 0.13 -0.7 137,487 + H281DRAFT_04418 0.13 +0.0 137,488 - H281DRAFT_04418 0.13 +1.0 137,488 - H281DRAFT_04418 0.13 -0.0 137,488 - H281DRAFT_04418 0.13 -3.3 137,630 + H281DRAFT_04418 0.20 -1.1 137,631 - H281DRAFT_04418 0.20 -0.0 137,769 - H281DRAFT_04418 0.26 -0.8 137,874 + H281DRAFT_04418 0.31 +1.1 137,898 + H281DRAFT_04418 0.33 -0.1 137,899 - H281DRAFT_04418 0.33 +0.4 137,922 + H281DRAFT_04418 0.34 +1.7 138,009 + H281DRAFT_04418 0.38 +0.9 138,249 + H281DRAFT_04418 0.50 +0.7 138,420 + H281DRAFT_04418 0.58 -1.2 138,903 + H281DRAFT_04418 0.81 +0.4 139,009 - H281DRAFT_04418 0.86 -0.6 139,009 - H281DRAFT_04418 0.86 +1.3 139,313 + +0.5 139,349 - +0.0 139,363 - -0.3 139,381 + -0.4 139,388 + +0.3 139,416 - +1.4 139,416 - -2.4 139,416 - -0.4 139,487 + +0.2 139,488 - -0.1 139,488 - -0.7 139,488 - +0.6 139,488 - +0.8 139,613 + +0.1 139,613 + +0.9 140,217 + H281DRAFT_04419 0.45 +0.1 140,218 - H281DRAFT_04419 0.45 -1.7
Or see this region's nucleotide sequence