Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03383

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03382 and H281DRAFT_03383 overlap by 4 nucleotidesH281DRAFT_03383 and H281DRAFT_03384 overlap by 4 nucleotides H281DRAFT_03382: H281DRAFT_03382 - CO or xanthine dehydrogenase, Mo-binding subunit, at 448,497 to 450,761 _03382 H281DRAFT_03383: H281DRAFT_03383 - Aerobic-type carbon monoxide dehydrogenase, small subunit, CoxS/CutS family, at 450,758 to 451,270 _03383 H281DRAFT_03384: H281DRAFT_03384 - Cytochrome c, mono- and diheme variants, at 451,267 to 452,544 _03384 Position (kb) 450 451 452Strain fitness (log2 ratio) -1 0 1at 450.079 kb on + strand, within H281DRAFT_03382at 450.080 kb on - strand, within H281DRAFT_03382at 450.525 kb on + strand, within H281DRAFT_03382at 451.203 kb on + strand, within H281DRAFT_03383at 451.204 kb on - strand, within H281DRAFT_03383at 451.260 kb on - strandat 451.297 kb on - strandat 451.388 kb on + strandat 451.671 kb on - strand, within H281DRAFT_03384

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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450,079 + H281DRAFT_03382 0.70 +1.3
450,080 - H281DRAFT_03382 0.70 +0.8
450,525 + H281DRAFT_03382 0.90 -0.1
451,203 + H281DRAFT_03383 0.87 +0.6
451,204 - H281DRAFT_03383 0.87 +0.9
451,260 - +0.9
451,297 - +0.0
451,388 + +1.2
451,671 - H281DRAFT_03384 0.32 -0.9

Or see this region's nucleotide sequence