Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02926 and H281DRAFT_02927 are separated by 52 nucleotides H281DRAFT_02927 and H281DRAFT_02928 are separated by 401 nucleotides
H281DRAFT_02926: H281DRAFT_02926 - diguanylate cyclase/phosphodiesterase, at 535,714 to 537,780
_02926
H281DRAFT_02927: H281DRAFT_02927 - DSF synthase, at 537,833 to 538,720
_02927
H281DRAFT_02928: H281DRAFT_02928 - uncharacterized oxidoreductase, at 539,122 to 540,225
_02928
Position (kb) 537
538
539 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 536.927 kb on - strand, within H281DRAFT_02926 at 537.304 kb on - strand, within H281DRAFT_02926 at 537.315 kb on - strand, within H281DRAFT_02926 at 537.455 kb on + strand, within H281DRAFT_02926 at 537.455 kb on + strand, within H281DRAFT_02926 at 537.456 kb on - strand, within H281DRAFT_02926 at 537.521 kb on + strand, within H281DRAFT_02926 at 537.522 kb on - strand, within H281DRAFT_02926 at 537.688 kb on + strand at 537.688 kb on + strand at 537.706 kb on + strand at 538.083 kb on + strand, within H281DRAFT_02927 at 538.084 kb on - strand, within H281DRAFT_02927 at 538.413 kb on + strand, within H281DRAFT_02927 at 538.414 kb on - strand, within H281DRAFT_02927 at 538.485 kb on + strand, within H281DRAFT_02927 at 538.486 kb on - strand, within H281DRAFT_02927 at 538.486 kb on - strand, within H281DRAFT_02927 at 538.486 kb on - strand, within H281DRAFT_02927 at 538.486 kb on - strand, within H281DRAFT_02927 at 538.486 kb on - strand, within H281DRAFT_02927 at 538.647 kb on + strand at 538.648 kb on - strand at 538.742 kb on - strand at 538.752 kb on - strand at 539.015 kb on - strand at 539.123 kb on + strand at 539.124 kb on - strand at 539.276 kb on + strand, within H281DRAFT_02928 at 539.277 kb on - strand, within H281DRAFT_02928 at 539.277 kb on - strand, within H281DRAFT_02928 at 539.280 kb on + strand, within H281DRAFT_02928 at 539.280 kb on + strand, within H281DRAFT_02928 at 539.280 kb on + strand, within H281DRAFT_02928 at 539.281 kb on - strand, within H281DRAFT_02928 at 539.281 kb on - strand, within H281DRAFT_02928 at 539.281 kb on - strand, within H281DRAFT_02928 at 539.400 kb on + strand, within H281DRAFT_02928 at 539.400 kb on + strand, within H281DRAFT_02928 at 539.401 kb on - strand, within H281DRAFT_02928 at 539.470 kb on + strand, within H281DRAFT_02928 at 539.471 kb on - strand, within H281DRAFT_02928 at 539.622 kb on - strand, within H281DRAFT_02928 at 539.643 kb on - strand, within H281DRAFT_02928
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 536,927 - H281DRAFT_02926 0.59 +2.8 537,304 - H281DRAFT_02926 0.77 +1.8 537,315 - H281DRAFT_02926 0.77 +1.8 537,455 + H281DRAFT_02926 0.84 +4.4 537,455 + H281DRAFT_02926 0.84 +2.6 537,456 - H281DRAFT_02926 0.84 +0.5 537,521 + H281DRAFT_02926 0.87 +2.4 537,522 - H281DRAFT_02926 0.87 +2.3 537,688 + +3.5 537,688 + +1.4 537,706 + +1.1 538,083 + H281DRAFT_02927 0.28 -0.7 538,084 - H281DRAFT_02927 0.28 -1.0 538,413 + H281DRAFT_02927 0.65 -0.1 538,414 - H281DRAFT_02927 0.65 +0.0 538,485 + H281DRAFT_02927 0.73 -2.0 538,486 - H281DRAFT_02927 0.74 -0.4 538,486 - H281DRAFT_02927 0.74 -0.7 538,486 - H281DRAFT_02927 0.74 +1.1 538,486 - H281DRAFT_02927 0.74 -1.9 538,486 - H281DRAFT_02927 0.74 -1.0 538,647 + +0.3 538,648 - +1.2 538,742 - +1.0 538,752 - +0.8 539,015 - +1.0 539,123 + +0.5 539,124 - +0.9 539,276 + H281DRAFT_02928 0.14 +0.6 539,277 - H281DRAFT_02928 0.14 -0.7 539,277 - H281DRAFT_02928 0.14 +0.2 539,280 + H281DRAFT_02928 0.14 +0.6 539,280 + H281DRAFT_02928 0.14 -0.2 539,280 + H281DRAFT_02928 0.14 -0.7 539,281 - H281DRAFT_02928 0.14 +1.1 539,281 - H281DRAFT_02928 0.14 -0.8 539,281 - H281DRAFT_02928 0.14 +0.1 539,400 + H281DRAFT_02928 0.25 +0.5 539,400 + H281DRAFT_02928 0.25 -0.2 539,401 - H281DRAFT_02928 0.25 +0.1 539,470 + H281DRAFT_02928 0.32 +0.3 539,471 - H281DRAFT_02928 0.32 +0.7 539,622 - H281DRAFT_02928 0.45 -0.9 539,643 - H281DRAFT_02928 0.47 +0.5
Or see this region's nucleotide sequence