Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02826 and H281DRAFT_02827 are separated by 197 nucleotides H281DRAFT_02827 and H281DRAFT_02828 are separated by 211 nucleotides H281DRAFT_02828 and H281DRAFT_02829 are separated by 27 nucleotides H281DRAFT_02829 and H281DRAFT_02830 are separated by 188 nucleotides
H281DRAFT_02826: H281DRAFT_02826 - transketolase, at 419,791 to 421,875
_02826
H281DRAFT_02827: H281DRAFT_02827 - Uncharacterized protein YjlB, at 422,073 to 422,618
_02827
H281DRAFT_02828: H281DRAFT_02828 - hypothetical protein, at 422,830 to 423,000
_02828
H281DRAFT_02829: H281DRAFT_02829 - hypothetical protein, at 423,028 to 423,288
_02829
H281DRAFT_02830: H281DRAFT_02830 - hypothetical protein, at 423,477 to 423,713
_02830
Position (kb) 422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 421.186 kb on + strand, within H281DRAFT_02826 at 421.186 kb on + strand, within H281DRAFT_02826 at 421.186 kb on + strand, within H281DRAFT_02826 at 421.203 kb on - strand, within H281DRAFT_02826 at 421.233 kb on + strand, within H281DRAFT_02826 at 421.233 kb on + strand at 421.280 kb on + strand, within H281DRAFT_02826 at 421.281 kb on - strand, within H281DRAFT_02826 at 421.428 kb on - strand, within H281DRAFT_02826 at 421.428 kb on - strand, within H281DRAFT_02826 at 421.458 kb on + strand, within H281DRAFT_02826 at 421.650 kb on - strand at 421.836 kb on + strand at 421.837 kb on - strand at 422.337 kb on + strand, within H281DRAFT_02827 at 422.401 kb on + strand, within H281DRAFT_02827 at 422.402 kb on - strand, within H281DRAFT_02827 at 422.506 kb on + strand, within H281DRAFT_02827 at 422.532 kb on - strand, within H281DRAFT_02827 at 422.746 kb on - strand at 422.887 kb on + strand, within H281DRAFT_02828 at 422.888 kb on - strand, within H281DRAFT_02828 at 422.929 kb on - strand, within H281DRAFT_02828 at 422.929 kb on - strand, within H281DRAFT_02828 at 422.929 kb on - strand, within H281DRAFT_02828 at 423.000 kb on + strand at 423.001 kb on - strand at 423.001 kb on - strand at 423.200 kb on + strand, within H281DRAFT_02829 at 423.330 kb on + strand at 423.331 kb on - strand at 423.534 kb on + strand, within H281DRAFT_02830 at 423.534 kb on + strand, within H281DRAFT_02830 at 423.535 kb on - strand, within H281DRAFT_02830 at 423.607 kb on - strand, within H281DRAFT_02830
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 421,186 + H281DRAFT_02826 0.67 +1.5 421,186 + H281DRAFT_02826 0.67 -1.1 421,186 + H281DRAFT_02826 0.67 -0.2 421,203 - H281DRAFT_02826 0.68 +0.6 421,233 + H281DRAFT_02826 0.69 +0.1 421,233 + -1.1 421,280 + H281DRAFT_02826 0.71 -0.7 421,281 - H281DRAFT_02826 0.71 -0.2 421,428 - H281DRAFT_02826 0.79 +0.5 421,428 - H281DRAFT_02826 0.79 -2.9 421,458 + H281DRAFT_02826 0.80 +1.0 421,650 - +0.9 421,836 + +1.8 421,837 - +0.1 422,337 + H281DRAFT_02827 0.48 -0.3 422,401 + H281DRAFT_02827 0.60 +0.3 422,402 - H281DRAFT_02827 0.60 +1.4 422,506 + H281DRAFT_02827 0.79 -0.1 422,532 - H281DRAFT_02827 0.84 +1.0 422,746 - -0.6 422,887 + H281DRAFT_02828 0.33 +0.7 422,888 - H281DRAFT_02828 0.34 -0.8 422,929 - H281DRAFT_02828 0.58 -1.0 422,929 - H281DRAFT_02828 0.58 +1.2 422,929 - H281DRAFT_02828 0.58 -0.8 423,000 + +0.2 423,001 - -0.4 423,001 - +0.8 423,200 + H281DRAFT_02829 0.66 -0.5 423,330 + +0.4 423,331 - +1.3 423,534 + H281DRAFT_02830 0.24 +1.2 423,534 + H281DRAFT_02830 0.24 +0.7 423,535 - H281DRAFT_02830 0.24 -2.2 423,607 - H281DRAFT_02830 0.55 +0.9
Or see this region's nucleotide sequence