Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01746 and H281DRAFT_01747 overlap by 4 nucleotides H281DRAFT_01747 and H281DRAFT_01748 are separated by 99 nucleotides
H281DRAFT_01746: H281DRAFT_01746 - D-3-phosphoglycerate dehydrogenase, at 641,207 to 642,214
_01746
H281DRAFT_01747: H281DRAFT_01747 - D-galactarolactone isomerase, at 642,211 to 643,026
_01747
H281DRAFT_01748: H281DRAFT_01748 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 643,126 to 645,504
_01748
Position (kb) 642
643
644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 641.218 kb on - strand at 641.218 kb on - strand at 641.303 kb on + strand at 641.473 kb on - strand, within H281DRAFT_01746 at 641.690 kb on + strand, within H281DRAFT_01746 at 641.894 kb on + strand, within H281DRAFT_01746 at 641.894 kb on + strand, within H281DRAFT_01746 at 641.895 kb on - strand, within H281DRAFT_01746 at 642.262 kb on + strand at 642.263 kb on - strand at 642.512 kb on + strand, within H281DRAFT_01747 at 642.513 kb on - strand, within H281DRAFT_01747 at 642.548 kb on + strand, within H281DRAFT_01747 at 642.643 kb on + strand, within H281DRAFT_01747 at 643.053 kb on - strand at 643.090 kb on + strand at 643.100 kb on + strand at 643.141 kb on + strand at 643.660 kb on + strand, within H281DRAFT_01748 at 643.661 kb on - strand, within H281DRAFT_01748 at 643.778 kb on + strand at 643.780 kb on + strand, within H281DRAFT_01748 at 643.782 kb on + strand, within H281DRAFT_01748 at 643.784 kb on + strand, within H281DRAFT_01748 at 643.784 kb on + strand, within H281DRAFT_01748 at 643.784 kb on + strand, within H281DRAFT_01748 at 643.784 kb on + strand, within H281DRAFT_01748 at 643.785 kb on - strand, within H281DRAFT_01748 at 643.922 kb on - strand, within H281DRAFT_01748
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 641,218 - +2.9 641,218 - -0.4 641,303 + -0.4 641,473 - H281DRAFT_01746 0.26 -0.4 641,690 + H281DRAFT_01746 0.48 -0.1 641,894 + H281DRAFT_01746 0.68 -0.6 641,894 + H281DRAFT_01746 0.68 -0.6 641,895 - H281DRAFT_01746 0.68 +1.2 642,262 + +1.3 642,263 - +1.8 642,512 + H281DRAFT_01747 0.37 +0.4 642,513 - H281DRAFT_01747 0.37 -0.0 642,548 + H281DRAFT_01747 0.41 -0.8 642,643 + H281DRAFT_01747 0.53 -0.7 643,053 - +0.8 643,090 + +0.3 643,100 + +0.7 643,141 + -0.7 643,660 + H281DRAFT_01748 0.22 -0.5 643,661 - H281DRAFT_01748 0.22 -0.8 643,778 + -0.6 643,780 + H281DRAFT_01748 0.27 -1.1 643,782 + H281DRAFT_01748 0.28 -0.1 643,784 + H281DRAFT_01748 0.28 +0.9 643,784 + H281DRAFT_01748 0.28 -3.0 643,784 + H281DRAFT_01748 0.28 -1.2 643,784 + H281DRAFT_01748 0.28 -1.6 643,785 - H281DRAFT_01748 0.28 +1.1 643,922 - H281DRAFT_01748 0.33 -1.1
Or see this region's nucleotide sequence