Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01540

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01539 and H281DRAFT_01540 are separated by 102 nucleotidesH281DRAFT_01540 and H281DRAFT_01541 overlap by 4 nucleotides H281DRAFT_01539: H281DRAFT_01539 - putative spermidine/putrescine transport system substrate-binding protein, at 410,511 to 411,554 _01539 H281DRAFT_01540: H281DRAFT_01540 - 5-(hydroxymethyl)furfural/furfural oxidase, at 411,657 to 413,420 _01540 H281DRAFT_01541: H281DRAFT_01541 - aldehyde dehydrogenase (NAD+), at 413,417 to 414,874 _01541 Position (kb) 411 412 413 414Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 411.552 kb on + strandat 411.702 kb on + strandat 411.761 kb on - strandat 411.862 kb on - strand, within H281DRAFT_01540at 412.131 kb on - strand, within H281DRAFT_01540at 412.321 kb on + strand, within H281DRAFT_01540at 412.339 kb on - strand, within H281DRAFT_01540at 413.542 kb on - strandat 413.550 kb on + strandat 413.767 kb on - strand, within H281DRAFT_01541at 413.865 kb on + strand, within H281DRAFT_01541at 414.387 kb on - strand, within H281DRAFT_01541

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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411,552 + -0.2
411,702 + +0.4
411,761 - +0.1
411,862 - H281DRAFT_01540 0.12 -0.5
412,131 - H281DRAFT_01540 0.27 +0.2
412,321 + H281DRAFT_01540 0.38 -0.1
412,339 - H281DRAFT_01540 0.39 -4.1
413,542 - +0.5
413,550 + +1.4
413,767 - H281DRAFT_01541 0.24 -1.2
413,865 + H281DRAFT_01541 0.31 +0.2
414,387 - H281DRAFT_01541 0.67 -0.7

Or see this region's nucleotide sequence