Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01066

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01065 and H281DRAFT_01066 are separated by 30 nucleotidesH281DRAFT_01066 and H281DRAFT_01067 are separated by 4 nucleotidesH281DRAFT_01067 and H281DRAFT_01068 overlap by 4 nucleotides H281DRAFT_01065: H281DRAFT_01065 - NitT/TauT family transport system substrate-binding protein, at 1,196,563 to 1,197,543 _01065 H281DRAFT_01066: H281DRAFT_01066 - Phenylpropionate dioxygenase, large terminal subunit, at 1,197,574 to 1,198,611 _01066 H281DRAFT_01067: H281DRAFT_01067 - NitT/TauT family transport system ATP-binding protein, at 1,198,616 to 1,199,440 _01067 H281DRAFT_01068: H281DRAFT_01068 - NitT/TauT family transport system permease protein, at 1,199,437 to 1,200,285 _01068 Position (kb) 1197 1198 1199Strain fitness (log2 ratio) -1 0 1at 1196.719 kb on + strand, within H281DRAFT_01065at 1197.008 kb on - strand, within H281DRAFT_01065at 1197.039 kb on + strand, within H281DRAFT_01065at 1197.040 kb on - strand, within H281DRAFT_01065at 1197.490 kb on + strandat 1197.515 kb on - strandat 1197.515 kb on - strandat 1198.003 kb on + strand, within H281DRAFT_01066at 1198.466 kb on - strand, within H281DRAFT_01066at 1199.232 kb on - strand, within H281DRAFT_01067at 1199.558 kb on + strand, within H281DRAFT_01068

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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1,196,719 + H281DRAFT_01065 0.16 -0.7
1,197,008 - H281DRAFT_01065 0.45 +0.0
1,197,039 + H281DRAFT_01065 0.49 +0.4
1,197,040 - H281DRAFT_01065 0.49 +1.2
1,197,490 + +0.4
1,197,515 - +0.2
1,197,515 - +0.5
1,198,003 + H281DRAFT_01066 0.41 +0.9
1,198,466 - H281DRAFT_01066 0.86 -0.1
1,199,232 - H281DRAFT_01067 0.75 -1.0
1,199,558 + H281DRAFT_01068 0.14 +0.9

Or see this region's nucleotide sequence