Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00709 and H281DRAFT_00710 are separated by 166 nucleotides H281DRAFT_00710 and H281DRAFT_00711 are separated by 212 nucleotides H281DRAFT_00711 and H281DRAFT_00712 are separated by 305 nucleotides H281DRAFT_00712 and H281DRAFT_00713 are separated by 195 nucleotides
H281DRAFT_00709: H281DRAFT_00709 - transcriptional regulator, TetR family, at 797,600 to 798,259
_00709
H281DRAFT_00710: H281DRAFT_00710 - tRNA_Leu_CAG, at 798,426 to 798,512
_00710
H281DRAFT_00711: H281DRAFT_00711 - tRNA_Leu_CAG, at 798,725 to 798,811
_00711
H281DRAFT_00712: H281DRAFT_00712 - RNAse R, at 799,117 to 801,618
_00712
H281DRAFT_00713: H281DRAFT_00713 - 23S rRNA Gm-2251 2'-O-methyltransferase, at 801,814 to 802,557
_00713
Position (kb) 799
800
801
802 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 798.123 kb on + strand, within H281DRAFT_00709 at 798.124 kb on - strand, within H281DRAFT_00709 at 798.124 kb on - strand, within H281DRAFT_00709 at 798.179 kb on - strand, within H281DRAFT_00709 at 798.251 kb on + strand at 798.252 kb on - strand at 798.348 kb on + strand at 798.348 kb on + strand at 798.348 kb on + strand at 798.349 kb on - strand at 798.350 kb on + strand at 798.484 kb on - strand, within H281DRAFT_00710 at 798.538 kb on + strand at 798.594 kb on + strand at 798.595 kb on - strand at 798.595 kb on - strand at 798.685 kb on - strand at 798.697 kb on - strand at 798.839 kb on - strand at 798.925 kb on - strand at 798.958 kb on + strand at 798.959 kb on - strand at 798.973 kb on + strand at 799.044 kb on - strand at 799.088 kb on - strand at 799.203 kb on + strand at 799.801 kb on + strand, within H281DRAFT_00712 at 799.801 kb on + strand, within H281DRAFT_00712 at 799.980 kb on - strand, within H281DRAFT_00712 at 800.033 kb on - strand, within H281DRAFT_00712 at 800.089 kb on + strand, within H281DRAFT_00712 at 800.266 kb on + strand, within H281DRAFT_00712 at 800.266 kb on + strand, within H281DRAFT_00712 at 800.267 kb on - strand, within H281DRAFT_00712 at 800.269 kb on - strand, within H281DRAFT_00712 at 800.425 kb on + strand, within H281DRAFT_00712 at 800.426 kb on - strand, within H281DRAFT_00712 at 800.426 kb on - strand, within H281DRAFT_00712 at 800.426 kb on - strand, within H281DRAFT_00712 at 800.426 kb on - strand, within H281DRAFT_00712 at 800.426 kb on - strand, within H281DRAFT_00712 at 800.426 kb on - strand, within H281DRAFT_00712 at 800.765 kb on - strand, within H281DRAFT_00712 at 800.765 kb on - strand, within H281DRAFT_00712 at 800.809 kb on + strand, within H281DRAFT_00712 at 800.809 kb on + strand, within H281DRAFT_00712 at 801.097 kb on + strand, within H281DRAFT_00712 at 801.127 kb on + strand, within H281DRAFT_00712 at 801.238 kb on + strand, within H281DRAFT_00712 at 801.654 kb on - strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.757 kb on - strand at 801.758 kb on + strand at 801.758 kb on + strand at 801.759 kb on - strand at 801.833 kb on + strand at 801.835 kb on + strand at 801.898 kb on + strand at 802.267 kb on + strand, within H281DRAFT_00713 at 802.267 kb on + strand, within H281DRAFT_00713 at 802.268 kb on - strand, within H281DRAFT_00713 at 802.363 kb on + strand, within H281DRAFT_00713 at 802.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 798,123 + H281DRAFT_00709 0.79 +0.3 798,124 - H281DRAFT_00709 0.79 -2.1 798,124 - H281DRAFT_00709 0.79 +0.0 798,179 - H281DRAFT_00709 0.88 -0.1 798,251 + -0.4 798,252 - -0.7 798,348 + -0.8 798,348 + +0.5 798,348 + +1.3 798,349 - +1.5 798,350 + +0.1 798,484 - H281DRAFT_00710 0.67 +0.6 798,538 + +0.9 798,594 + +2.5 798,595 - -0.2 798,595 - -0.4 798,685 - -0.2 798,697 - -1.1 798,839 - -0.8 798,925 - +0.5 798,958 + +0.6 798,959 - +1.5 798,973 + -3.9 799,044 - +1.3 799,088 - +0.8 799,203 + -2.7 799,801 + H281DRAFT_00712 0.27 +0.5 799,801 + H281DRAFT_00712 0.27 +0.7 799,980 - H281DRAFT_00712 0.34 +0.1 800,033 - H281DRAFT_00712 0.37 +1.1 800,089 + H281DRAFT_00712 0.39 +1.2 800,266 + H281DRAFT_00712 0.46 +0.4 800,266 + H281DRAFT_00712 0.46 -0.6 800,267 - H281DRAFT_00712 0.46 -0.2 800,269 - H281DRAFT_00712 0.46 +0.9 800,425 + H281DRAFT_00712 0.52 -0.0 800,426 - H281DRAFT_00712 0.52 -1.3 800,426 - H281DRAFT_00712 0.52 +3.5 800,426 - H281DRAFT_00712 0.52 -0.6 800,426 - H281DRAFT_00712 0.52 +2.8 800,426 - H281DRAFT_00712 0.52 +0.9 800,426 - H281DRAFT_00712 0.52 -1.2 800,765 - H281DRAFT_00712 0.66 -0.1 800,765 - H281DRAFT_00712 0.66 +0.7 800,809 + H281DRAFT_00712 0.68 +1.9 800,809 + H281DRAFT_00712 0.68 -2.3 801,097 + H281DRAFT_00712 0.79 +0.8 801,127 + H281DRAFT_00712 0.80 +1.0 801,238 + H281DRAFT_00712 0.85 -1.0 801,654 - -2.3 801,756 + +0.1 801,756 + -0.4 801,756 + +1.2 801,756 + +0.3 801,757 - -0.9 801,758 + -1.4 801,758 + +0.8 801,759 - -0.2 801,833 + +0.5 801,835 + -0.5 801,898 + -1.1 802,267 + H281DRAFT_00713 0.61 +0.6 802,267 + H281DRAFT_00713 0.61 +1.3 802,268 - H281DRAFT_00713 0.61 -2.2 802,363 + H281DRAFT_00713 0.74 +1.2 802,555 + +0.3
Or see this region's nucleotide sequence