Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00089 and H281DRAFT_00090 are separated by 24 nucleotides H281DRAFT_00090 and H281DRAFT_00091 are separated by 31 nucleotides H281DRAFT_00091 and H281DRAFT_00092 overlap by 4 nucleotides
H281DRAFT_00089: H281DRAFT_00089 - urease accessory protein, at 90,045 to 91,037
_00089
H281DRAFT_00090: H281DRAFT_00090 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 91,062 to 91,754
_00090
H281DRAFT_00091: H281DRAFT_00091 - urea transport system ATP-binding protein, at 91,786 to 92,649
_00091
H281DRAFT_00092: H281DRAFT_00092 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 92,646 to 93,851
_00092
Position (kb) 91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 90.962 kb on - strand at 90.967 kb on + strand at 90.968 kb on - strand at 90.968 kb on - strand at 90.968 kb on - strand at 90.978 kb on - strand at 91.038 kb on - strand at 91.038 kb on - strand at 91.181 kb on - strand, within H281DRAFT_00090 at 91.411 kb on + strand, within H281DRAFT_00090 at 91.497 kb on - strand, within H281DRAFT_00090 at 91.517 kb on - strand, within H281DRAFT_00090 at 91.517 kb on - strand, within H281DRAFT_00090 at 91.744 kb on - strand at 91.749 kb on + strand at 91.750 kb on - strand at 91.750 kb on - strand at 91.750 kb on - strand at 92.350 kb on + strand, within H281DRAFT_00091 at 92.516 kb on + strand, within H281DRAFT_00091 at 92.517 kb on - strand, within H281DRAFT_00091 at 92.920 kb on + strand, within H281DRAFT_00092 at 92.921 kb on - strand, within H281DRAFT_00092 at 92.993 kb on - strand, within H281DRAFT_00092 at 93.214 kb on + strand, within H281DRAFT_00092 at 93.470 kb on - strand, within H281DRAFT_00092 at 93.575 kb on - strand, within H281DRAFT_00092
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 90,962 - +0.1 90,967 + -1.4 90,968 - +0.7 90,968 - -0.8 90,968 - +0.6 90,978 - -1.0 91,038 - -0.0 91,038 - -3.3 91,181 - H281DRAFT_00090 0.17 -0.2 91,411 + H281DRAFT_00090 0.50 -1.0 91,497 - H281DRAFT_00090 0.63 -0.1 91,517 - H281DRAFT_00090 0.66 +0.6 91,517 - H281DRAFT_00090 0.66 +0.6 91,744 - -0.1 91,749 + -0.1 91,750 - +1.8 91,750 - +0.2 91,750 - +0.5 92,350 + H281DRAFT_00091 0.65 +0.3 92,516 + H281DRAFT_00091 0.84 -1.0 92,517 - H281DRAFT_00091 0.85 -0.8 92,920 + H281DRAFT_00092 0.23 +0.3 92,921 - H281DRAFT_00092 0.23 +0.1 92,993 - H281DRAFT_00092 0.29 -1.4 93,214 + H281DRAFT_00092 0.47 -1.8 93,470 - H281DRAFT_00092 0.68 -0.6 93,575 - H281DRAFT_00092 0.77 -0.7
Or see this region's nucleotide sequence