Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00015 and H281DRAFT_00016 are separated by 283 nucleotides H281DRAFT_00016 and H281DRAFT_00017 are separated by 143 nucleotides
H281DRAFT_00015: H281DRAFT_00015 - hypothetical protein, at 15,488 to 15,649
_00015
H281DRAFT_00016: H281DRAFT_00016 - beta-glucosidase, at 15,933 to 18,224
_00016
H281DRAFT_00017: H281DRAFT_00017 - hypothetical protein, at 18,368 to 19,171
_00017
Position (kb) 15
16
17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 15.161 kb on + strand at 15.162 kb on - strand at 15.162 kb on - strand at 15.182 kb on + strand at 15.183 kb on - strand at 15.262 kb on - strand at 15.395 kb on + strand at 15.396 kb on - strand at 15.396 kb on - strand at 15.540 kb on + strand, within H281DRAFT_00015 at 15.601 kb on - strand, within H281DRAFT_00015 at 15.643 kb on - strand at 15.719 kb on + strand at 15.754 kb on + strand at 15.754 kb on + strand at 15.759 kb on - strand at 15.891 kb on - strand at 16.079 kb on + strand at 16.079 kb on + strand at 16.079 kb on + strand at 16.079 kb on + strand at 16.235 kb on + strand, within H281DRAFT_00016 at 16.473 kb on + strand, within H281DRAFT_00016 at 16.570 kb on + strand, within H281DRAFT_00016 at 16.641 kb on + strand, within H281DRAFT_00016 at 16.702 kb on - strand, within H281DRAFT_00016 at 16.722 kb on + strand, within H281DRAFT_00016 at 16.722 kb on + strand, within H281DRAFT_00016 at 16.723 kb on - strand, within H281DRAFT_00016 at 16.786 kb on - strand, within H281DRAFT_00016 at 16.786 kb on - strand, within H281DRAFT_00016 at 17.075 kb on - strand, within H281DRAFT_00016 at 17.144 kb on + strand, within H281DRAFT_00016 at 17.144 kb on + strand, within H281DRAFT_00016 at 17.144 kb on + strand, within H281DRAFT_00016 at 17.148 kb on + strand, within H281DRAFT_00016 at 17.149 kb on - strand, within H281DRAFT_00016 at 17.149 kb on - strand, within H281DRAFT_00016 at 17.162 kb on + strand, within H281DRAFT_00016 at 17.198 kb on + strand, within H281DRAFT_00016 at 17.198 kb on + strand, within H281DRAFT_00016 at 17.202 kb on + strand, within H281DRAFT_00016 at 17.237 kb on - strand, within H281DRAFT_00016 at 17.248 kb on + strand, within H281DRAFT_00016 at 17.248 kb on + strand, within H281DRAFT_00016 at 17.530 kb on - strand, within H281DRAFT_00016 at 17.530 kb on - strand, within H281DRAFT_00016 at 17.636 kb on + strand, within H281DRAFT_00016 at 17.637 kb on - strand, within H281DRAFT_00016 at 17.705 kb on - strand, within H281DRAFT_00016 at 17.725 kb on - strand, within H281DRAFT_00016 at 18.000 kb on + strand at 18.000 kb on + strand at 18.001 kb on - strand at 18.001 kb on - strand at 18.001 kb on - strand at 18.001 kb on - strand at 18.001 kb on - strand at 18.032 kb on + strand at 18.033 kb on - strand at 18.033 kb on - strand at 18.084 kb on - strand at 18.084 kb on - strand at 18.084 kb on - strand at 18.084 kb on - strand at 18.090 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.282 kb on - strand at 18.343 kb on + strand at 18.344 kb on - strand at 18.345 kb on + strand at 18.345 kb on + strand at 18.346 kb on - strand at 18.346 kb on - strand at 18.737 kb on + strand, within H281DRAFT_00017 at 18.740 kb on - strand, within H281DRAFT_00017 at 18.804 kb on - strand, within H281DRAFT_00017 at 18.833 kb on + strand, within H281DRAFT_00017 at 18.833 kb on + strand, within H281DRAFT_00017 at 18.834 kb on - strand, within H281DRAFT_00017 at 18.914 kb on - strand, within H281DRAFT_00017 at 18.954 kb on - strand, within H281DRAFT_00017 at 18.954 kb on - strand, within H281DRAFT_00017 at 19.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 15,161 + -0.2 15,162 - +1.0 15,162 - -1.4 15,182 + +0.1 15,183 - +0.4 15,262 - -0.4 15,395 + -1.8 15,396 - +1.2 15,396 - -0.2 15,540 + H281DRAFT_00015 0.32 -2.9 15,601 - H281DRAFT_00015 0.70 -0.2 15,643 - -1.1 15,719 + +2.2 15,754 + +0.6 15,754 + -0.0 15,759 - -1.7 15,891 - +0.8 16,079 + +1.4 16,079 + +1.0 16,079 + -0.3 16,079 + +0.3 16,235 + H281DRAFT_00016 0.13 +0.7 16,473 + H281DRAFT_00016 0.24 -1.6 16,570 + H281DRAFT_00016 0.28 -1.5 16,641 + H281DRAFT_00016 0.31 -0.1 16,702 - H281DRAFT_00016 0.34 +0.8 16,722 + H281DRAFT_00016 0.34 -0.8 16,722 + H281DRAFT_00016 0.34 -0.0 16,723 - H281DRAFT_00016 0.34 +3.2 16,786 - H281DRAFT_00016 0.37 +0.6 16,786 - H281DRAFT_00016 0.37 -3.0 17,075 - H281DRAFT_00016 0.50 +0.1 17,144 + H281DRAFT_00016 0.53 -0.8 17,144 + H281DRAFT_00016 0.53 -0.8 17,144 + H281DRAFT_00016 0.53 +0.9 17,148 + H281DRAFT_00016 0.53 -0.3 17,149 - H281DRAFT_00016 0.53 +0.2 17,149 - H281DRAFT_00016 0.53 -0.1 17,162 + H281DRAFT_00016 0.54 +1.8 17,198 + H281DRAFT_00016 0.55 -3.3 17,198 + H281DRAFT_00016 0.55 -0.5 17,202 + H281DRAFT_00016 0.55 -0.0 17,237 - H281DRAFT_00016 0.57 -1.0 17,248 + H281DRAFT_00016 0.57 -0.2 17,248 + H281DRAFT_00016 0.57 +0.3 17,530 - H281DRAFT_00016 0.70 -0.6 17,530 - H281DRAFT_00016 0.70 -0.6 17,636 + H281DRAFT_00016 0.74 +0.6 17,637 - H281DRAFT_00016 0.74 +1.0 17,705 - H281DRAFT_00016 0.77 +0.6 17,725 - H281DRAFT_00016 0.78 -2.6 18,000 + +0.4 18,000 + +0.2 18,001 - +1.1 18,001 - -0.6 18,001 - -0.1 18,001 - -0.6 18,001 - +0.9 18,032 + -0.9 18,033 - +0.0 18,033 - -0.5 18,084 - -0.2 18,084 - -0.1 18,084 - -0.2 18,084 - -0.2 18,090 + +2.0 18,115 + +0.4 18,115 + +1.6 18,282 - +0.3 18,343 + -2.2 18,344 - -0.8 18,345 + -0.6 18,345 + -0.4 18,346 - +0.1 18,346 - -0.3 18,737 + H281DRAFT_00017 0.46 -1.1 18,740 - H281DRAFT_00017 0.46 +0.2 18,804 - H281DRAFT_00017 0.54 -0.4 18,833 + H281DRAFT_00017 0.58 +0.7 18,833 + H281DRAFT_00017 0.58 -2.0 18,834 - H281DRAFT_00017 0.58 -1.0 18,914 - H281DRAFT_00017 0.68 +0.5 18,954 - H281DRAFT_00017 0.73 -0.4 18,954 - H281DRAFT_00017 0.73 +0.7 19,116 + -0.3
Or see this region's nucleotide sequence