Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01980

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01960 and PGA1_262p01970 are separated by 168 nucleotidesPGA1_262p01970 and PGA1_262p01980 are separated by 43 nucleotidesPGA1_262p01980 and PGA1_262p01990 are separated by 97 nucleotides PGA1_262p01960: PGA1_262p01960 - hypothetical protein, at 215,123 to 215,875 _262p01960 PGA1_262p01970: PGA1_262p01970 - putative transcriptional regulator, TetR family, at 216,044 to 216,652 _262p01970 PGA1_262p01980: PGA1_262p01980 - putative enoyl-CoA hydratase, at 216,696 to 217,487 _262p01980 PGA1_262p01990: PGA1_262p01990 - Predicted permeases, at 217,585 to 218,607 _262p01990 Position (kb) 216 217 218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 215.698 kb on - strand, within PGA1_262p01960at 215.701 kb on - strand, within PGA1_262p01960at 215.707 kb on - strand, within PGA1_262p01960at 215.799 kb on + strand, within PGA1_262p01960at 215.799 kb on + strand, within PGA1_262p01960at 215.799 kb on + strand, within PGA1_262p01960at 215.907 kb on + strandat 215.907 kb on + strandat 215.907 kb on + strandat 215.915 kb on - strandat 215.915 kb on - strandat 215.915 kb on - strandat 215.917 kb on + strandat 215.937 kb on + strandat 215.942 kb on + strandat 215.947 kb on - strandat 215.950 kb on - strandat 215.950 kb on - strandat 215.955 kb on + strandat 215.968 kb on - strandat 215.977 kb on + strandat 216.001 kb on + strandat 216.207 kb on + strand, within PGA1_262p01970at 216.251 kb on - strand, within PGA1_262p01970at 216.251 kb on - strand, within PGA1_262p01970at 216.292 kb on - strand, within PGA1_262p01970at 216.397 kb on - strand, within PGA1_262p01970at 216.430 kb on + strand, within PGA1_262p01970at 216.438 kb on - strand, within PGA1_262p01970at 216.438 kb on - strand, within PGA1_262p01970at 216.488 kb on - strand, within PGA1_262p01970at 216.526 kb on + strand, within PGA1_262p01970at 216.532 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.616 kb on + strandat 216.636 kb on - strandat 216.660 kb on + strandat 216.739 kb on + strandat 216.739 kb on + strandat 216.744 kb on + strandat 216.744 kb on + strandat 216.744 kb on + strandat 216.747 kb on - strandat 216.752 kb on - strandat 216.752 kb on - strandat 216.764 kb on + strandat 216.772 kb on + strandat 216.784 kb on - strand, within PGA1_262p01980at 216.784 kb on - strand, within PGA1_262p01980at 216.784 kb on - strand, within PGA1_262p01980at 216.862 kb on - strand, within PGA1_262p01980at 216.864 kb on + strand, within PGA1_262p01980at 216.875 kb on + strand, within PGA1_262p01980at 216.922 kb on - strand, within PGA1_262p01980at 216.922 kb on - strand, within PGA1_262p01980at 216.965 kb on + strand, within PGA1_262p01980at 216.973 kb on - strand, within PGA1_262p01980at 216.973 kb on - strand, within PGA1_262p01980at 217.011 kb on + strand, within PGA1_262p01980at 217.049 kb on + strand, within PGA1_262p01980at 217.114 kb on - strand, within PGA1_262p01980at 217.268 kb on + strand, within PGA1_262p01980at 217.273 kb on - strand, within PGA1_262p01980at 217.279 kb on + strand, within PGA1_262p01980at 217.346 kb on + strand, within PGA1_262p01980at 217.353 kb on + strand, within PGA1_262p01980at 217.355 kb on + strand, within PGA1_262p01980at 217.363 kb on - strand, within PGA1_262p01980at 217.400 kb on - strand, within PGA1_262p01980at 217.409 kb on + strandat 217.445 kb on - strandat 217.446 kb on - strandat 217.582 kb on + strandat 217.582 kb on + strandat 217.624 kb on + strandat 217.632 kb on - strandat 217.775 kb on - strand, within PGA1_262p01990at 217.793 kb on - strand, within PGA1_262p01990at 217.796 kb on - strand, within PGA1_262p01990at 217.809 kb on - strand, within PGA1_262p01990at 217.809 kb on - strand, within PGA1_262p01990at 217.846 kb on + strand, within PGA1_262p01990at 217.854 kb on - strand, within PGA1_262p01990at 217.854 kb on - strand, within PGA1_262p01990at 217.883 kb on + strand, within PGA1_262p01990at 217.883 kb on + strand, within PGA1_262p01990at 217.934 kb on - strand, within PGA1_262p01990at 217.944 kb on - strand, within PGA1_262p01990at 217.944 kb on - strand, within PGA1_262p01990at 217.944 kb on - strand, within PGA1_262p01990at 218.144 kb on - strand, within PGA1_262p01990at 218.426 kb on + strand, within PGA1_262p01990

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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215,698 - PGA1_262p01960 0.76 +0.2
215,701 - PGA1_262p01960 0.77 +1.2
215,707 - PGA1_262p01960 0.78 -0.4
215,799 + PGA1_262p01960 0.90 +0.2
215,799 + PGA1_262p01960 0.90 -2.1
215,799 + PGA1_262p01960 0.90 +0.2
215,907 + -0.4
215,907 + -0.7
215,907 + -0.6
215,915 - -0.2
215,915 - -0.4
215,915 - +0.4
215,917 + -0.9
215,937 + +1.0
215,942 + -1.2
215,947 - +0.1
215,950 - -0.5
215,950 - -0.9
215,955 + +0.6
215,968 - +0.6
215,977 + -1.2
216,001 + -0.5
216,207 + PGA1_262p01970 0.27 +0.2
216,251 - PGA1_262p01970 0.34 -0.5
216,251 - PGA1_262p01970 0.34 -0.9
216,292 - PGA1_262p01970 0.41 -0.1
216,397 - PGA1_262p01970 0.58 +0.1
216,430 + PGA1_262p01970 0.63 -0.6
216,438 - PGA1_262p01970 0.65 -1.4
216,438 - PGA1_262p01970 0.65 -1.3
216,488 - PGA1_262p01970 0.73 +0.1
216,526 + PGA1_262p01970 0.79 +0.0
216,532 - PGA1_262p01970 0.80 +2.0
216,534 - PGA1_262p01970 0.80 +1.5
216,534 - PGA1_262p01970 0.80 -0.8
216,534 - PGA1_262p01970 0.80 -0.5
216,534 - PGA1_262p01970 0.80 -0.5
216,534 - PGA1_262p01970 0.80 -0.1
216,616 + -0.9
216,636 - +0.3
216,660 + +0.1
216,739 + -0.7
216,739 + -1.1
216,744 + +1.2
216,744 + -1.2
216,744 + -1.7
216,747 - +0.1
216,752 - -0.1
216,752 - -0.6
216,764 + -0.4
216,772 + -0.2
216,784 - PGA1_262p01980 0.11 +0.5
216,784 - PGA1_262p01980 0.11 +0.4
216,784 - PGA1_262p01980 0.11 -0.4
216,862 - PGA1_262p01980 0.21 -1.4
216,864 + PGA1_262p01980 0.21 -1.4
216,875 + PGA1_262p01980 0.23 +0.6
216,922 - PGA1_262p01980 0.29 +0.7
216,922 - PGA1_262p01980 0.29 -0.5
216,965 + PGA1_262p01980 0.34 +0.2
216,973 - PGA1_262p01980 0.35 -0.0
216,973 - PGA1_262p01980 0.35 -1.4
217,011 + PGA1_262p01980 0.40 -0.4
217,049 + PGA1_262p01980 0.45 +0.2
217,114 - PGA1_262p01980 0.53 +1.0
217,268 + PGA1_262p01980 0.72 -1.9
217,273 - PGA1_262p01980 0.73 +0.1
217,279 + PGA1_262p01980 0.74 +0.8
217,346 + PGA1_262p01980 0.82 -0.7
217,353 + PGA1_262p01980 0.83 -0.9
217,355 + PGA1_262p01980 0.83 +0.1
217,363 - PGA1_262p01980 0.84 -0.4
217,400 - PGA1_262p01980 0.89 +1.2
217,409 + +1.1
217,445 - +1.6
217,446 - +0.1
217,582 + +0.4
217,582 + -0.3
217,624 + +0.2
217,632 - +0.3
217,775 - PGA1_262p01990 0.19 -0.3
217,793 - PGA1_262p01990 0.20 -0.4
217,796 - PGA1_262p01990 0.21 -1.3
217,809 - PGA1_262p01990 0.22 +1.0
217,809 - PGA1_262p01990 0.22 -1.2
217,846 + PGA1_262p01990 0.26 -2.8
217,854 - PGA1_262p01990 0.26 -1.4
217,854 - PGA1_262p01990 0.26 +0.8
217,883 + PGA1_262p01990 0.29 +0.5
217,883 + PGA1_262p01990 0.29 -0.6
217,934 - PGA1_262p01990 0.34 +1.5
217,944 - PGA1_262p01990 0.35 -1.4
217,944 - PGA1_262p01990 0.35 +0.3
217,944 - PGA1_262p01990 0.35 -0.0
218,144 - PGA1_262p01990 0.55 +0.6
218,426 + PGA1_262p01990 0.82 +0.3

Or see this region's nucleotide sequence