Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01820

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01810 and PGA1_262p01820 overlap by 4 nucleotidesPGA1_262p01820 and PGA1_262p01830 are separated by 551 nucleotides PGA1_262p01810: PGA1_262p01810 - hypothetical protein, at 198,551 to 200,254 _262p01810 PGA1_262p01820: PGA1_262p01820 - Protein of unknown function (DUF3726)., at 200,251 to 200,901 _262p01820 PGA1_262p01830: PGA1_262p01830 - putative aminomethyltransferase, at 201,453 to 202,559 _262p01830 Position (kb) 200 201Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 199.280 kb on - strand, within PGA1_262p01810at 199.280 kb on - strand, within PGA1_262p01810at 199.280 kb on - strand, within PGA1_262p01810at 199.440 kb on - strand, within PGA1_262p01810at 199.475 kb on + strand, within PGA1_262p01810at 199.478 kb on - strand, within PGA1_262p01810at 199.484 kb on - strand, within PGA1_262p01810at 199.488 kb on - strand, within PGA1_262p01810at 199.541 kb on + strand, within PGA1_262p01810at 199.541 kb on + strand, within PGA1_262p01810at 199.544 kb on - strand, within PGA1_262p01810at 199.586 kb on - strand, within PGA1_262p01810at 199.791 kb on + strand, within PGA1_262p01810at 199.962 kb on + strand, within PGA1_262p01810at 200.067 kb on + strand, within PGA1_262p01810at 200.067 kb on + strand, within PGA1_262p01810at 200.075 kb on - strand, within PGA1_262p01810at 200.075 kb on - strand, within PGA1_262p01810at 200.075 kb on - strand, within PGA1_262p01810at 200.075 kb on - strand, within PGA1_262p01810at 200.075 kb on - strand, within PGA1_262p01810at 200.075 kb on - strand, within PGA1_262p01810at 200.081 kb on + strand, within PGA1_262p01810at 200.185 kb on + strandat 200.308 kb on + strandat 200.313 kb on + strandat 200.321 kb on - strand, within PGA1_262p01820at 200.418 kb on + strand, within PGA1_262p01820at 200.433 kb on + strand, within PGA1_262p01820at 200.737 kb on - strand, within PGA1_262p01820at 200.761 kb on + strand, within PGA1_262p01820at 200.761 kb on + strand, within PGA1_262p01820at 200.773 kb on + strand, within PGA1_262p01820at 200.786 kb on - strand, within PGA1_262p01820at 200.872 kb on - strandat 200.905 kb on + strandat 200.905 kb on + strandat 200.905 kb on + strandat 200.913 kb on - strandat 200.918 kb on - strandat 200.923 kb on + strandat 200.977 kb on + strandat 200.977 kb on + strandat 200.977 kb on + strandat 200.985 kb on - strandat 200.985 kb on - strandat 200.985 kb on - strandat 200.992 kb on + strandat 200.999 kb on + strandat 201.073 kb on + strandat 201.074 kb on - strandat 201.074 kb on - strandat 201.081 kb on - strandat 201.082 kb on - strandat 201.112 kb on - strandat 201.135 kb on + strandat 201.181 kb on + strandat 201.254 kb on + strandat 201.257 kb on + strandat 201.320 kb on + strandat 201.320 kb on + strandat 201.455 kb on - strandat 201.465 kb on + strandat 201.478 kb on - strandat 201.483 kb on - strandat 201.494 kb on + strandat 201.494 kb on + strandat 201.502 kb on - strandat 201.502 kb on - strandat 201.518 kb on - strandat 201.595 kb on + strand, within PGA1_262p01830at 201.595 kb on + strand, within PGA1_262p01830at 201.674 kb on - strand, within PGA1_262p01830at 201.784 kb on + strand, within PGA1_262p01830at 201.838 kb on + strand, within PGA1_262p01830at 201.859 kb on - strand, within PGA1_262p01830at 201.859 kb on - strand, within PGA1_262p01830at 201.867 kb on + strand, within PGA1_262p01830at 201.879 kb on - strand, within PGA1_262p01830at 201.884 kb on + strand, within PGA1_262p01830at 201.893 kb on - strand, within PGA1_262p01830at 201.899 kb on + strand, within PGA1_262p01830at 201.900 kb on + strand, within PGA1_262p01830

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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199,280 - PGA1_262p01810 0.43 -1.2
199,280 - PGA1_262p01810 0.43 +0.1
199,280 - PGA1_262p01810 0.43 +0.2
199,440 - PGA1_262p01810 0.52 -0.5
199,475 + PGA1_262p01810 0.54 +0.6
199,478 - PGA1_262p01810 0.54 -0.4
199,484 - PGA1_262p01810 0.55 +0.5
199,488 - PGA1_262p01810 0.55 +1.0
199,541 + PGA1_262p01810 0.58 -2.1
199,541 + PGA1_262p01810 0.58 -1.5
199,544 - PGA1_262p01810 0.58 +0.6
199,586 - PGA1_262p01810 0.61 -1.7
199,791 + PGA1_262p01810 0.73 +0.3
199,962 + PGA1_262p01810 0.83 +0.2
200,067 + PGA1_262p01810 0.89 -0.9
200,067 + PGA1_262p01810 0.89 +0.8
200,075 - PGA1_262p01810 0.89 -0.4
200,075 - PGA1_262p01810 0.89 -2.3
200,075 - PGA1_262p01810 0.89 +1.0
200,075 - PGA1_262p01810 0.89 +0.9
200,075 - PGA1_262p01810 0.89 +0.5
200,075 - PGA1_262p01810 0.89 +1.6
200,081 + PGA1_262p01810 0.90 -0.4
200,185 + +1.8
200,308 + -0.7
200,313 + +0.2
200,321 - PGA1_262p01820 0.11 +0.9
200,418 + PGA1_262p01820 0.26 +0.3
200,433 + PGA1_262p01820 0.28 -0.5
200,737 - PGA1_262p01820 0.75 +1.6
200,761 + PGA1_262p01820 0.78 +1.1
200,761 + PGA1_262p01820 0.78 -2.2
200,773 + PGA1_262p01820 0.80 +0.8
200,786 - PGA1_262p01820 0.82 +1.1
200,872 - -1.3
200,905 + -1.4
200,905 + -0.2
200,905 + +0.9
200,913 - -0.3
200,918 - +1.4
200,923 + +1.5
200,977 + -0.4
200,977 + -0.4
200,977 + +0.1
200,985 - -0.9
200,985 - +0.6
200,985 - +0.2
200,992 + -0.6
200,999 + -0.8
201,073 + -0.3
201,074 - -3.1
201,074 - -0.1
201,081 - +1.6
201,082 - +0.5
201,112 - -1.2
201,135 + +0.3
201,181 + +0.6
201,254 + +0.0
201,257 + -1.7
201,320 + +0.8
201,320 + +0.3
201,455 - -0.9
201,465 + +1.1
201,478 - +1.1
201,483 - +0.4
201,494 + +1.6
201,494 + +0.9
201,502 - +1.1
201,502 - +0.6
201,518 - -0.7
201,595 + PGA1_262p01830 0.13 -1.7
201,595 + PGA1_262p01830 0.13 +1.2
201,674 - PGA1_262p01830 0.20 +0.1
201,784 + PGA1_262p01830 0.30 +0.6
201,838 + PGA1_262p01830 0.35 -0.3
201,859 - PGA1_262p01830 0.37 +0.1
201,859 - PGA1_262p01830 0.37 -2.3
201,867 + PGA1_262p01830 0.37 +0.3
201,879 - PGA1_262p01830 0.38 +1.6
201,884 + PGA1_262p01830 0.39 +1.5
201,893 - PGA1_262p01830 0.40 -0.0
201,899 + PGA1_262p01830 0.40 -0.4
201,900 + PGA1_262p01830 0.40 -0.1

Or see this region's nucleotide sequence