Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31560 and RR42_RS31565 are separated by 194 nucleotides RR42_RS31565 and RR42_RS31570 are separated by 200 nucleotides RR42_RS31570 and RR42_RS31575 are separated by 151 nucleotides RR42_RS31575 and RR42_RS31580 are separated by 73 nucleotides
RR42_RS31560: RR42_RS31560 - TetR family transcriptional regulator, at 2,460,766 to 2,461,326
_RS31560
RR42_RS31565: RR42_RS31565 - 50S ribosomal protein L21, at 2,461,521 to 2,462,000
_RS31565
RR42_RS31570: RR42_RS31570 - Asp/Glu/hydantoin racemase, at 2,462,201 to 2,462,821
_RS31570
RR42_RS31575: RR42_RS31575 - GntR family transcriptional regulator, at 2,462,973 to 2,463,656
_RS31575
RR42_RS31580: RR42_RS31580 - 3-hydroxybutyryl-CoA dehydratase, at 2,463,730 to 2,464,494
_RS31580
Position (kb)
2462
2463 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2461.388 kb on - strand at 2461.502 kb on + strand at 2461.502 kb on + strand at 2461.502 kb on + strand at 2461.502 kb on + strand at 2461.523 kb on - strand at 2461.523 kb on - strand at 2461.523 kb on - strand at 2461.679 kb on - strand, within RR42_RS31565 at 2461.679 kb on - strand, within RR42_RS31565 at 2461.688 kb on - strand, within RR42_RS31565 at 2461.718 kb on - strand, within RR42_RS31565 at 2461.718 kb on - strand, within RR42_RS31565 at 2461.729 kb on - strand, within RR42_RS31565 at 2461.876 kb on + strand, within RR42_RS31565 at 2461.876 kb on + strand, within RR42_RS31565 at 2461.877 kb on - strand, within RR42_RS31565 at 2461.932 kb on + strand, within RR42_RS31565 at 2462.301 kb on + strand, within RR42_RS31570 at 2462.301 kb on + strand, within RR42_RS31570 at 2462.301 kb on + strand, within RR42_RS31570 at 2462.302 kb on - strand, within RR42_RS31570 at 2462.602 kb on + strand, within RR42_RS31570 at 2462.622 kb on + strand, within RR42_RS31570 at 2462.658 kb on + strand, within RR42_RS31570 at 2462.658 kb on + strand, within RR42_RS31570 at 2462.680 kb on + strand, within RR42_RS31570 at 2462.680 kb on + strand, within RR42_RS31570 at 2462.680 kb on + strand, within RR42_RS31570 at 2462.680 kb on + strand, within RR42_RS31570 at 2462.681 kb on - strand, within RR42_RS31570 at 2462.681 kb on - strand, within RR42_RS31570 at 2462.682 kb on + strand, within RR42_RS31570 at 2462.683 kb on - strand, within RR42_RS31570 at 2462.683 kb on - strand, within RR42_RS31570 at 2462.799 kb on + strand at 2462.806 kb on - strand at 2462.931 kb on + strand at 2463.007 kb on + strand at 2463.008 kb on - strand at 2463.188 kb on - strand, within RR42_RS31575 at 2463.232 kb on + strand, within RR42_RS31575 at 2463.233 kb on - strand, within RR42_RS31575
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 2,461,388 - +0.0 2,461,502 + +0.5 2,461,502 + +0.2 2,461,502 + +3.6 2,461,502 + +1.0 2,461,523 - -0.7 2,461,523 - +1.0 2,461,523 - +0.5 2,461,679 - RR42_RS31565 0.33 -0.8 2,461,679 - RR42_RS31565 0.33 -0.2 2,461,688 - RR42_RS31565 0.35 -1.5 2,461,718 - RR42_RS31565 0.41 +1.2 2,461,718 - RR42_RS31565 0.41 -1.0 2,461,729 - RR42_RS31565 0.43 -1.0 2,461,876 + RR42_RS31565 0.74 -0.2 2,461,876 + RR42_RS31565 0.74 -1.7 2,461,877 - RR42_RS31565 0.74 +0.0 2,461,932 + RR42_RS31565 0.86 -0.2 2,462,301 + RR42_RS31570 0.16 -0.1 2,462,301 + RR42_RS31570 0.16 +1.0 2,462,301 + RR42_RS31570 0.16 -2.3 2,462,302 - RR42_RS31570 0.16 +0.7 2,462,602 + RR42_RS31570 0.65 -0.5 2,462,622 + RR42_RS31570 0.68 +0.3 2,462,658 + RR42_RS31570 0.74 +0.6 2,462,658 + RR42_RS31570 0.74 -2.0 2,462,680 + RR42_RS31570 0.77 +0.7 2,462,680 + RR42_RS31570 0.77 -1.0 2,462,680 + RR42_RS31570 0.77 -0.7 2,462,680 + RR42_RS31570 0.77 -0.6 2,462,681 - RR42_RS31570 0.77 -0.8 2,462,681 - RR42_RS31570 0.77 +0.3 2,462,682 + RR42_RS31570 0.77 +1.0 2,462,683 - RR42_RS31570 0.78 +1.7 2,462,683 - RR42_RS31570 0.78 +0.8 2,462,799 + +1.0 2,462,806 - -0.7 2,462,931 + +1.4 2,463,007 + -1.2 2,463,008 - +0.0 2,463,188 - RR42_RS31575 0.31 +1.0 2,463,232 + RR42_RS31575 0.38 +0.6 2,463,233 - RR42_RS31575 0.38 +0.6
Or see this region's nucleotide sequence