Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31570

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31560 and RR42_RS31565 are separated by 194 nucleotidesRR42_RS31565 and RR42_RS31570 are separated by 200 nucleotidesRR42_RS31570 and RR42_RS31575 are separated by 151 nucleotidesRR42_RS31575 and RR42_RS31580 are separated by 73 nucleotides RR42_RS31560: RR42_RS31560 - TetR family transcriptional regulator, at 2,460,766 to 2,461,326 _RS31560 RR42_RS31565: RR42_RS31565 - 50S ribosomal protein L21, at 2,461,521 to 2,462,000 _RS31565 RR42_RS31570: RR42_RS31570 - Asp/Glu/hydantoin racemase, at 2,462,201 to 2,462,821 _RS31570 RR42_RS31575: RR42_RS31575 - GntR family transcriptional regulator, at 2,462,973 to 2,463,656 _RS31575 RR42_RS31580: RR42_RS31580 - 3-hydroxybutyryl-CoA dehydratase, at 2,463,730 to 2,464,494 _RS31580 Position (kb) 2462 2463Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2461.388 kb on - strandat 2461.502 kb on + strandat 2461.502 kb on + strandat 2461.502 kb on + strandat 2461.502 kb on + strandat 2461.523 kb on - strandat 2461.523 kb on - strandat 2461.523 kb on - strandat 2461.679 kb on - strand, within RR42_RS31565at 2461.679 kb on - strand, within RR42_RS31565at 2461.688 kb on - strand, within RR42_RS31565at 2461.718 kb on - strand, within RR42_RS31565at 2461.718 kb on - strand, within RR42_RS31565at 2461.729 kb on - strand, within RR42_RS31565at 2461.876 kb on + strand, within RR42_RS31565at 2461.876 kb on + strand, within RR42_RS31565at 2461.877 kb on - strand, within RR42_RS31565at 2461.932 kb on + strand, within RR42_RS31565at 2462.301 kb on + strand, within RR42_RS31570at 2462.301 kb on + strand, within RR42_RS31570at 2462.301 kb on + strand, within RR42_RS31570at 2462.302 kb on - strand, within RR42_RS31570at 2462.602 kb on + strand, within RR42_RS31570at 2462.622 kb on + strand, within RR42_RS31570at 2462.658 kb on + strand, within RR42_RS31570at 2462.658 kb on + strand, within RR42_RS31570at 2462.680 kb on + strand, within RR42_RS31570at 2462.680 kb on + strand, within RR42_RS31570at 2462.680 kb on + strand, within RR42_RS31570at 2462.680 kb on + strand, within RR42_RS31570at 2462.681 kb on - strand, within RR42_RS31570at 2462.681 kb on - strand, within RR42_RS31570at 2462.682 kb on + strand, within RR42_RS31570at 2462.683 kb on - strand, within RR42_RS31570at 2462.683 kb on - strand, within RR42_RS31570at 2462.799 kb on + strandat 2462.806 kb on - strandat 2462.931 kb on + strandat 2463.007 kb on + strandat 2463.008 kb on - strandat 2463.188 kb on - strand, within RR42_RS31575at 2463.232 kb on + strand, within RR42_RS31575at 2463.233 kb on - strand, within RR42_RS31575

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,461,388 - +0.0
2,461,502 + +0.5
2,461,502 + +0.2
2,461,502 + +3.6
2,461,502 + +1.0
2,461,523 - -0.7
2,461,523 - +1.0
2,461,523 - +0.5
2,461,679 - RR42_RS31565 0.33 -0.8
2,461,679 - RR42_RS31565 0.33 -0.2
2,461,688 - RR42_RS31565 0.35 -1.5
2,461,718 - RR42_RS31565 0.41 +1.2
2,461,718 - RR42_RS31565 0.41 -1.0
2,461,729 - RR42_RS31565 0.43 -1.0
2,461,876 + RR42_RS31565 0.74 -0.2
2,461,876 + RR42_RS31565 0.74 -1.7
2,461,877 - RR42_RS31565 0.74 +0.0
2,461,932 + RR42_RS31565 0.86 -0.2
2,462,301 + RR42_RS31570 0.16 -0.1
2,462,301 + RR42_RS31570 0.16 +1.0
2,462,301 + RR42_RS31570 0.16 -2.3
2,462,302 - RR42_RS31570 0.16 +0.7
2,462,602 + RR42_RS31570 0.65 -0.5
2,462,622 + RR42_RS31570 0.68 +0.3
2,462,658 + RR42_RS31570 0.74 +0.6
2,462,658 + RR42_RS31570 0.74 -2.0
2,462,680 + RR42_RS31570 0.77 +0.7
2,462,680 + RR42_RS31570 0.77 -1.0
2,462,680 + RR42_RS31570 0.77 -0.7
2,462,680 + RR42_RS31570 0.77 -0.6
2,462,681 - RR42_RS31570 0.77 -0.8
2,462,681 - RR42_RS31570 0.77 +0.3
2,462,682 + RR42_RS31570 0.77 +1.0
2,462,683 - RR42_RS31570 0.78 +1.7
2,462,683 - RR42_RS31570 0.78 +0.8
2,462,799 + +1.0
2,462,806 - -0.7
2,462,931 + +1.4
2,463,007 + -1.2
2,463,008 - +0.0
2,463,188 - RR42_RS31575 0.31 +1.0
2,463,232 + RR42_RS31575 0.38 +0.6
2,463,233 - RR42_RS31575 0.38 +0.6

Or see this region's nucleotide sequence