Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23355 and RR42_RS23360 are separated by 34 nucleotides RR42_RS23360 and RR42_RS23365 overlap by 4 nucleotides RR42_RS23365 and RR42_RS23370 are separated by 44 nucleotides RR42_RS23370 and RR42_RS23375 overlap by 8 nucleotides
RR42_RS23355: RR42_RS23355 - flagellar biosynthetic protein FliQ, at 570,429 to 570,698
_RS23355
RR42_RS23360: RR42_RS23360 - flagellar biosynthesis protein flip, at 570,733 to 571,575
_RS23360
RR42_RS23365: RR42_RS23365 - flagellar biosynthesis protein FliO, at 571,572 to 572,042
_RS23365
RR42_RS23370: RR42_RS23370 - flagellar motor switch protein FliN, at 572,087 to 572,545
_RS23370
RR42_RS23375: RR42_RS23375 - flagellar motor switch protein FliM, at 572,538 to 573,545
_RS23375
Position (kb) 571
572
573 Strain fitness (log2 ratio) -1
0
1
2 at 570.682 kb on - strand at 570.871 kb on + strand, within RR42_RS23360 at 570.910 kb on - strand, within RR42_RS23360 at 571.134 kb on - strand, within RR42_RS23360 at 571.134 kb on - strand, within RR42_RS23360 at 571.145 kb on + strand, within RR42_RS23360 at 571.146 kb on - strand, within RR42_RS23360 at 571.800 kb on + strand, within RR42_RS23365 at 571.801 kb on - strand, within RR42_RS23365 at 572.190 kb on + strand, within RR42_RS23370 at 572.303 kb on + strand, within RR42_RS23370 at 572.304 kb on - strand, within RR42_RS23370 at 572.596 kb on - strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.697 kb on + strand, within RR42_RS23375 at 572.698 kb on - strand, within RR42_RS23375 at 572.698 kb on - strand, within RR42_RS23375 at 572.698 kb on - strand, within RR42_RS23375 at 572.731 kb on - strand, within RR42_RS23375 at 572.821 kb on - strand, within RR42_RS23375 at 572.821 kb on - strand, within RR42_RS23375 at 573.002 kb on + strand, within RR42_RS23375 at 573.024 kb on + strand, within RR42_RS23375 at 573.024 kb on + strand, within RR42_RS23375 at 573.024 kb on + strand, within RR42_RS23375 at 573.024 kb on + strand, within RR42_RS23375
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 570,682 - +0.0 570,871 + RR42_RS23360 0.16 -0.7 570,910 - RR42_RS23360 0.21 +0.9 571,134 - RR42_RS23360 0.48 -0.1 571,134 - RR42_RS23360 0.48 +0.6 571,145 + RR42_RS23360 0.49 +0.1 571,146 - RR42_RS23360 0.49 +0.8 571,800 + RR42_RS23365 0.48 +0.7 571,801 - RR42_RS23365 0.49 -0.7 572,190 + RR42_RS23370 0.22 -1.3 572,303 + RR42_RS23370 0.47 -1.3 572,304 - RR42_RS23370 0.47 -0.2 572,596 - +0.6 572,609 - -0.2 572,609 - -0.5 572,697 + RR42_RS23375 0.16 -0.3 572,698 - RR42_RS23375 0.16 -0.1 572,698 - RR42_RS23375 0.16 -0.4 572,698 - RR42_RS23375 0.16 -1.0 572,731 - RR42_RS23375 0.19 +0.3 572,821 - RR42_RS23375 0.28 +1.9 572,821 - RR42_RS23375 0.28 +1.3 573,002 + RR42_RS23375 0.46 -0.9 573,024 + RR42_RS23375 0.48 -0.3 573,024 + RR42_RS23375 0.48 +0.3 573,024 + RR42_RS23375 0.48 +0.1 573,024 + RR42_RS23375 0.48 +0.8
Or see this region's nucleotide sequence