Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21325

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21320 and RR42_RS21325 are separated by 24 nucleotidesRR42_RS21325 and RR42_RS21330 are separated by 101 nucleotides RR42_RS21320: RR42_RS21320 - ethanolamine ammonia-lyase, at 110,148 to 111,530 _RS21320 RR42_RS21325: RR42_RS21325 - ethanolamine ammonia-lyase, at 111,555 to 112,367 _RS21325 RR42_RS21330: RR42_RS21330 - phosphoserine phosphatase, at 112,469 to 113,758 _RS21330 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 111.003 kb on + strand, within RR42_RS21320at 111.003 kb on + strand, within RR42_RS21320at 111.003 kb on + strand, within RR42_RS21320at 111.004 kb on - strand, within RR42_RS21320at 111.150 kb on + strand, within RR42_RS21320at 111.151 kb on - strand, within RR42_RS21320at 111.151 kb on - strand, within RR42_RS21320at 111.156 kb on + strand, within RR42_RS21320at 111.157 kb on - strand, within RR42_RS21320at 111.275 kb on + strand, within RR42_RS21320at 111.276 kb on - strand, within RR42_RS21320at 111.360 kb on + strand, within RR42_RS21320at 111.391 kb on - strand, within RR42_RS21320at 111.407 kb on - strandat 111.529 kb on - strandat 111.801 kb on + strand, within RR42_RS21325at 111.801 kb on + strand, within RR42_RS21325at 111.802 kb on - strand, within RR42_RS21325at 112.122 kb on + strand, within RR42_RS21325at 112.184 kb on - strand, within RR42_RS21325at 112.352 kb on + strandat 112.495 kb on - strandat 112.495 kb on - strandat 112.495 kb on - strandat 112.646 kb on + strand, within RR42_RS21330at 112.647 kb on - strand, within RR42_RS21330at 112.751 kb on + strand, within RR42_RS21330at 112.752 kb on - strand, within RR42_RS21330at 112.907 kb on + strand, within RR42_RS21330at 112.907 kb on + strand, within RR42_RS21330at 112.907 kb on + strand, within RR42_RS21330at 112.907 kb on + strand, within RR42_RS21330at 112.908 kb on - strand, within RR42_RS21330at 112.982 kb on + strand, within RR42_RS21330at 112.983 kb on - strand, within RR42_RS21330at 113.016 kb on - strand, within RR42_RS21330at 113.069 kb on + strand, within RR42_RS21330at 113.070 kb on - strand, within RR42_RS21330at 113.070 kb on - strand, within RR42_RS21330at 113.255 kb on + strand, within RR42_RS21330at 113.255 kb on + strand, within RR42_RS21330at 113.256 kb on - strand, within RR42_RS21330at 113.351 kb on + strand, within RR42_RS21330at 113.352 kb on - strand, within RR42_RS21330

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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111,003 + RR42_RS21320 0.62 -0.3
111,003 + RR42_RS21320 0.62 -0.0
111,003 + RR42_RS21320 0.62 +0.7
111,004 - RR42_RS21320 0.62 +1.4
111,150 + RR42_RS21320 0.72 +0.2
111,151 - RR42_RS21320 0.73 -0.0
111,151 - RR42_RS21320 0.73 +1.1
111,156 + RR42_RS21320 0.73 +0.5
111,157 - RR42_RS21320 0.73 -0.2
111,275 + RR42_RS21320 0.81 -0.2
111,276 - RR42_RS21320 0.82 +1.7
111,360 + RR42_RS21320 0.88 -0.1
111,391 - RR42_RS21320 0.90 -1.2
111,407 - -1.3
111,529 - -0.5
111,801 + RR42_RS21325 0.30 +0.8
111,801 + RR42_RS21325 0.30 +0.0
111,802 - RR42_RS21325 0.30 +0.1
112,122 + RR42_RS21325 0.70 -0.7
112,184 - RR42_RS21325 0.77 +1.0
112,352 + -0.8
112,495 - +0.4
112,495 - -1.6
112,495 - +0.4
112,646 + RR42_RS21330 0.14 +1.1
112,647 - RR42_RS21330 0.14 -0.0
112,751 + RR42_RS21330 0.22 +1.0
112,752 - RR42_RS21330 0.22 +0.3
112,907 + RR42_RS21330 0.34 +2.1
112,907 + RR42_RS21330 0.34 +0.1
112,907 + RR42_RS21330 0.34 +0.6
112,907 + RR42_RS21330 0.34 +0.8
112,908 - RR42_RS21330 0.34 -1.9
112,982 + RR42_RS21330 0.40 +0.3
112,983 - RR42_RS21330 0.40 -0.6
113,016 - RR42_RS21330 0.42 +0.9
113,069 + RR42_RS21330 0.47 +0.9
113,070 - RR42_RS21330 0.47 -0.6
113,070 - RR42_RS21330 0.47 -2.0
113,255 + RR42_RS21330 0.61 +0.0
113,255 + RR42_RS21330 0.61 -0.9
113,256 - RR42_RS21330 0.61 +0.3
113,351 + RR42_RS21330 0.68 -1.6
113,352 - RR42_RS21330 0.68 +0.3

Or see this region's nucleotide sequence