Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20430 and RR42_RS20435 are separated by 60 nucleotides RR42_RS20435 and RR42_RS20440 are separated by 52 nucleotides RR42_RS20440 and RR42_RS20445 overlap by 4 nucleotides RR42_RS20445 and RR42_RS20450 are separated by 175 nucleotides
RR42_RS20430: RR42_RS20430 - tRNA-Phe, at 4,425,921 to 4,425,996
_RS20430
RR42_RS20435: RR42_RS20435 - XRE family transcriptional regulator, at 4,426,057 to 4,426,761
_RS20435
RR42_RS20440: RR42_RS20440 - histidine kinase, at 4,426,814 to 4,429,282
_RS20440
RR42_RS20445: RR42_RS20445 - hypothetical protein, at 4,429,279 to 4,429,998
_RS20445
RR42_RS20450: RR42_RS20450 - 16S rRNA methyltransferase, at 4,430,174 to 4,431,526
_RS20450
Position (kb) 4426
4427
4428
4429
4430 Strain fitness (log2 ratio) -2
-1
0
1 at 4426.762 kb on - strand at 4426.762 kb on - strand at 4426.762 kb on - strand at 4426.816 kb on - strand at 4426.816 kb on - strand at 4426.968 kb on + strand at 4426.987 kb on + strand at 4427.070 kb on + strand, within RR42_RS20440 at 4427.070 kb on + strand, within RR42_RS20440 at 4429.234 kb on - strand at 4430.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 4,426,762 - -0.7 4,426,762 - +1.0 4,426,762 - -1.2 4,426,816 - -0.4 4,426,816 - -0.6 4,426,968 + +0.4 4,426,987 + -2.1 4,427,070 + RR42_RS20440 0.10 -0.6 4,427,070 + RR42_RS20440 0.10 -0.9 4,429,234 - -0.1 4,430,200 - +1.6
Or see this region's nucleotide sequence