Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13675

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13670 and RR42_RS13675 overlap by 8 nucleotidesRR42_RS13675 and RR42_RS13680 are separated by 5 nucleotidesRR42_RS13680 and RR42_RS13685 are separated by 68 nucleotides RR42_RS13670: RR42_RS13670 - hypothetical protein, at 2,951,091 to 2,952,812 _RS13670 RR42_RS13675: RR42_RS13675 - short-chain dehydrogenase, at 2,952,805 to 2,953,608 _RS13675 RR42_RS13680: RR42_RS13680 - IclR family transcriptional regulator, at 2,953,614 to 2,954,444 _RS13680 RR42_RS13685: RR42_RS13685 - cupin, at 2,954,513 to 2,955,049 _RS13685 Position (kb) 2952 2953 2954Strain fitness (log2 ratio) -3 -2 -1 0 1at 2951.872 kb on + strand, within RR42_RS13670at 2951.872 kb on + strand, within RR42_RS13670at 2951.873 kb on - strand, within RR42_RS13670at 2951.884 kb on + strand, within RR42_RS13670at 2951.885 kb on - strand, within RR42_RS13670at 2952.299 kb on + strand, within RR42_RS13670at 2952.460 kb on + strand, within RR42_RS13670at 2952.460 kb on + strand, within RR42_RS13670at 2952.461 kb on - strand, within RR42_RS13670at 2952.461 kb on - strand, within RR42_RS13670at 2952.514 kb on - strand, within RR42_RS13670at 2952.934 kb on - strand, within RR42_RS13675at 2952.934 kb on - strand, within RR42_RS13675at 2953.424 kb on + strand, within RR42_RS13675at 2953.424 kb on + strand, within RR42_RS13675at 2953.528 kb on + strandat 2953.625 kb on - strandat 2953.784 kb on + strand, within RR42_RS13680at 2953.784 kb on + strand, within RR42_RS13680at 2953.785 kb on - strand, within RR42_RS13680at 2953.785 kb on - strand, within RR42_RS13680at 2954.074 kb on + strand, within RR42_RS13680at 2954.075 kb on - strand, within RR42_RS13680at 2954.185 kb on + strand, within RR42_RS13680at 2954.404 kb on + strandat 2954.405 kb on - strandat 2954.405 kb on - strandat 2954.405 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,951,872 + RR42_RS13670 0.45 +0.3
2,951,872 + RR42_RS13670 0.45 -0.6
2,951,873 - RR42_RS13670 0.45 -1.1
2,951,884 + RR42_RS13670 0.46 +0.0
2,951,885 - RR42_RS13670 0.46 -0.6
2,952,299 + RR42_RS13670 0.70 +0.3
2,952,460 + RR42_RS13670 0.80 -0.0
2,952,460 + RR42_RS13670 0.80 -0.3
2,952,461 - RR42_RS13670 0.80 -0.3
2,952,461 - RR42_RS13670 0.80 +1.1
2,952,514 - RR42_RS13670 0.83 -1.8
2,952,934 - RR42_RS13675 0.16 +0.8
2,952,934 - RR42_RS13675 0.16 +0.3
2,953,424 + RR42_RS13675 0.77 +0.6
2,953,424 + RR42_RS13675 0.77 +0.0
2,953,528 + -0.1
2,953,625 - -1.1
2,953,784 + RR42_RS13680 0.20 +0.4
2,953,784 + RR42_RS13680 0.20 +0.0
2,953,785 - RR42_RS13680 0.21 -0.6
2,953,785 - RR42_RS13680 0.21 -0.7
2,954,074 + RR42_RS13680 0.55 +0.2
2,954,075 - RR42_RS13680 0.55 -2.9
2,954,185 + RR42_RS13680 0.69 -0.9
2,954,404 + +0.3
2,954,405 - -0.8
2,954,405 - +1.4
2,954,405 - -0.9

Or see this region's nucleotide sequence