Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12595

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12585 and RR42_RS12590 are separated by 256 nucleotidesRR42_RS12590 and RR42_RS12595 are separated by 31 nucleotidesRR42_RS12595 and RR42_RS12600 are separated by 3 nucleotidesRR42_RS12600 and RR42_RS12605 are separated by 74 nucleotidesRR42_RS12605 and RR42_RS12610 are separated by 101 nucleotides RR42_RS12585: RR42_RS12585 - DNA helicase, at 2,704,554 to 2,705,945 _RS12585 RR42_RS12590: RR42_RS12590 - 50S ribosomal protein L9, at 2,706,202 to 2,706,654 _RS12590 RR42_RS12595: RR42_RS12595 - 30S ribosomal protein S18, at 2,706,686 to 2,706,964 _RS12595 RR42_RS12600: RR42_RS12600 - primosomal replication protein N, at 2,706,968 to 2,707,267 _RS12600 RR42_RS12605: RR42_RS12605 - 30S ribosomal protein S6, at 2,707,342 to 2,707,716 _RS12605 RR42_RS12610: RR42_RS12610 - glutaminase, at 2,707,818 to 2,708,816 _RS12610 Position (kb) 2706 2707Strain fitness (log2 ratio) -2 -1 0 1 2at 2705.958 kb on + strandat 2705.958 kb on + strandat 2705.958 kb on + strandat 2705.959 kb on - strandat 2706.049 kb on + strandat 2706.049 kb on + strandat 2706.050 kb on - strandat 2706.203 kb on + strandat 2706.203 kb on + strandat 2706.581 kb on + strand, within RR42_RS12590at 2706.708 kb on + strandat 2707.834 kb on - strandat 2707.834 kb on - strandat 2707.910 kb on + strandat 2707.911 kb on - strandat 2707.911 kb on - strandat 2707.912 kb on + strandat 2707.912 kb on + strandat 2707.912 kb on + strandat 2707.913 kb on - strandat 2707.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,705,958 + -0.8
2,705,958 + +0.5
2,705,958 + -0.2
2,705,959 - -1.1
2,706,049 + -0.5
2,706,049 + +2.0
2,706,050 - +1.3
2,706,203 + -0.0
2,706,203 + -2.5
2,706,581 + RR42_RS12590 0.84 -1.8
2,706,708 + -0.4
2,707,834 - +0.8
2,707,834 - +0.5
2,707,910 + +0.6
2,707,911 - +0.2
2,707,911 - +1.8
2,707,912 + -0.2
2,707,912 + +0.3
2,707,912 + -0.0
2,707,913 - -0.5
2,707,913 - -0.8

Or see this region's nucleotide sequence