Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01490

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01480 and RR42_RS01485 are separated by 43 nucleotidesRR42_RS01485 and RR42_RS01490 are separated by 42 nucleotidesRR42_RS01490 and RR42_RS01495 are separated by 17 nucleotides RR42_RS01480: RR42_RS01480 - hypothetical protein, at 334,403 to 335,668 _RS01480 RR42_RS01485: RR42_RS01485 - phosphonate transporter, at 335,712 to 336,077 _RS01485 RR42_RS01490: RR42_RS01490 - histidine kinase, at 336,120 to 337,553 _RS01490 RR42_RS01495: RR42_RS01495 - diguanylate cyclase, at 337,571 to 339,352 _RS01495 Position (kb) 336 337 338Strain fitness (log2 ratio) -2 -1 0 1 2 3at 335.232 kb on + strand, within RR42_RS01480at 335.232 kb on + strand, within RR42_RS01480at 335.233 kb on - strand, within RR42_RS01480at 335.307 kb on - strand, within RR42_RS01480at 335.434 kb on + strand, within RR42_RS01480at 335.435 kb on - strand, within RR42_RS01480at 335.435 kb on - strand, within RR42_RS01480at 335.436 kb on + strand, within RR42_RS01480at 335.437 kb on - strand, within RR42_RS01480at 335.474 kb on + strand, within RR42_RS01480at 335.474 kb on + strand, within RR42_RS01480at 335.474 kb on + strand, within RR42_RS01480at 335.474 kb on + strand, within RR42_RS01480at 335.620 kb on + strandat 335.620 kb on + strandat 335.620 kb on + strandat 335.620 kb on + strandat 335.620 kb on + strandat 335.621 kb on - strandat 335.621 kb on - strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.731 kb on + strandat 335.732 kb on - strandat 335.806 kb on + strand, within RR42_RS01485at 335.806 kb on + strand, within RR42_RS01485at 335.807 kb on - strand, within RR42_RS01485at 336.122 kb on - strandat 336.404 kb on + strand, within RR42_RS01490at 336.405 kb on - strand, within RR42_RS01490at 336.405 kb on - strand, within RR42_RS01490at 336.405 kb on - strand, within RR42_RS01490at 336.606 kb on + strand, within RR42_RS01490at 336.606 kb on + strand, within RR42_RS01490at 336.607 kb on - strand, within RR42_RS01490at 336.607 kb on - strand, within RR42_RS01490at 337.084 kb on + strand, within RR42_RS01490at 337.084 kb on + strand, within RR42_RS01490at 337.084 kb on + strand, within RR42_RS01490at 337.170 kb on - strand, within RR42_RS01490at 337.242 kb on + strand, within RR42_RS01490at 337.255 kb on + strand, within RR42_RS01490at 337.255 kb on + strand, within RR42_RS01490at 337.256 kb on - strand, within RR42_RS01490at 337.357 kb on + strand, within RR42_RS01490at 337.358 kb on - strand, within RR42_RS01490at 337.380 kb on + strand, within RR42_RS01490at 337.381 kb on - strand, within RR42_RS01490at 337.524 kb on + strandat 337.524 kb on + strandat 337.525 kb on - strandat 338.096 kb on + strand, within RR42_RS01495at 338.097 kb on - strand, within RR42_RS01495at 338.097 kb on - strand, within RR42_RS01495at 338.100 kb on + strand, within RR42_RS01495at 338.100 kb on + strand, within RR42_RS01495at 338.100 kb on + strand, within RR42_RS01495at 338.101 kb on - strand, within RR42_RS01495at 338.410 kb on - strand, within RR42_RS01495at 338.439 kb on + strand, within RR42_RS01495at 338.439 kb on + strand, within RR42_RS01495at 338.439 kb on + strand, within RR42_RS01495at 338.439 kb on + strand, within RR42_RS01495at 338.440 kb on - strand, within RR42_RS01495at 338.440 kb on - strand, within RR42_RS01495at 338.440 kb on - strand, within RR42_RS01495at 338.440 kb on - strand, within RR42_RS01495

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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335,232 + RR42_RS01480 0.65 +0.5
335,232 + RR42_RS01480 0.65 -0.6
335,233 - RR42_RS01480 0.66 -0.2
335,307 - RR42_RS01480 0.71 -0.0
335,434 + RR42_RS01480 0.81 -0.4
335,435 - RR42_RS01480 0.82 +0.3
335,435 - RR42_RS01480 0.82 +0.0
335,436 + RR42_RS01480 0.82 +0.5
335,437 - RR42_RS01480 0.82 -2.1
335,474 + RR42_RS01480 0.85 +0.1
335,474 + RR42_RS01480 0.85 -0.6
335,474 + RR42_RS01480 0.85 +0.3
335,474 + RR42_RS01480 0.85 +0.1
335,620 + +0.8
335,620 + +0.3
335,620 + -0.4
335,620 + +0.1
335,620 + -0.7
335,621 - -0.6
335,621 - -0.7
335,622 + -1.2
335,622 + +0.2
335,622 + +0.4
335,622 + +0.4
335,622 + +0.2
335,622 + -1.2
335,622 + -1.0
335,623 - -0.4
335,623 - +0.2
335,623 - +0.4
335,623 - +0.5
335,623 - -0.8
335,623 - -0.7
335,623 - +1.4
335,623 - +2.2
335,731 + +2.1
335,732 - -0.5
335,806 + RR42_RS01485 0.26 -0.5
335,806 + RR42_RS01485 0.26 +1.1
335,807 - RR42_RS01485 0.26 +0.6
336,122 - +0.5
336,404 + RR42_RS01490 0.20 -0.2
336,405 - RR42_RS01490 0.20 +0.6
336,405 - RR42_RS01490 0.20 +0.8
336,405 - RR42_RS01490 0.20 +0.3
336,606 + RR42_RS01490 0.34 +3.0
336,606 + RR42_RS01490 0.34 +0.4
336,607 - RR42_RS01490 0.34 +0.6
336,607 - RR42_RS01490 0.34 -0.6
337,084 + RR42_RS01490 0.67 +0.5
337,084 + RR42_RS01490 0.67 +1.1
337,084 + RR42_RS01490 0.67 -0.3
337,170 - RR42_RS01490 0.73 +0.3
337,242 + RR42_RS01490 0.78 -0.0
337,255 + RR42_RS01490 0.79 +0.7
337,255 + RR42_RS01490 0.79 +0.0
337,256 - RR42_RS01490 0.79 -0.8
337,357 + RR42_RS01490 0.86 -1.2
337,358 - RR42_RS01490 0.86 +1.0
337,380 + RR42_RS01490 0.88 +1.1
337,381 - RR42_RS01490 0.88 +0.3
337,524 + -0.1
337,524 + +0.5
337,525 - +0.4
338,096 + RR42_RS01495 0.29 +0.9
338,097 - RR42_RS01495 0.30 +0.6
338,097 - RR42_RS01495 0.30 +0.0
338,100 + RR42_RS01495 0.30 -1.8
338,100 + RR42_RS01495 0.30 +1.5
338,100 + RR42_RS01495 0.30 -0.3
338,101 - RR42_RS01495 0.30 +1.5
338,410 - RR42_RS01495 0.47 +1.0
338,439 + RR42_RS01495 0.49 +2.2
338,439 + RR42_RS01495 0.49 -0.2
338,439 + RR42_RS01495 0.49 -0.1
338,439 + RR42_RS01495 0.49 +0.6
338,440 - RR42_RS01495 0.49 -0.5
338,440 - RR42_RS01495 0.49 -0.5
338,440 - RR42_RS01495 0.49 -0.5
338,440 - RR42_RS01495 0.49 +0.1

Or see this region's nucleotide sequence