Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00860

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00855 and RR42_RS00860 are separated by 198 nucleotidesRR42_RS00860 and RR42_RS00865 are separated by 85 nucleotidesRR42_RS00865 and RR42_RS00870 are separated by 72 nucleotides RR42_RS00855: RR42_RS00855 - Zn-dependent hydrolase, at 207,526 to 208,599 _RS00855 RR42_RS00860: RR42_RS00860 - MerR family transcriptional regulator, at 208,798 to 209,232 _RS00860 RR42_RS00865: RR42_RS00865 - phenylacetic acid degradation protein PaaI, at 209,318 to 209,776 _RS00865 RR42_RS00870: RR42_RS00870 - isovaleryl-CoA dehydrogenase, at 209,849 to 211,039 _RS00870 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 207.830 kb on + strand, within RR42_RS00855at 207.830 kb on + strand, within RR42_RS00855at 207.831 kb on - strand, within RR42_RS00855at 207.831 kb on - strand, within RR42_RS00855at 207.831 kb on - strand, within RR42_RS00855at 207.851 kb on + strand, within RR42_RS00855at 207.851 kb on + strand, within RR42_RS00855at 207.852 kb on - strand, within RR42_RS00855at 207.852 kb on - strand, within RR42_RS00855at 207.852 kb on - strand, within RR42_RS00855at 207.853 kb on + strand, within RR42_RS00855at 207.854 kb on - strand, within RR42_RS00855at 207.854 kb on - strand, within RR42_RS00855at 207.854 kb on - strand, within RR42_RS00855at 207.960 kb on - strand, within RR42_RS00855at 207.967 kb on + strand, within RR42_RS00855at 207.967 kb on + strand, within RR42_RS00855at 207.967 kb on + strand, within RR42_RS00855at 207.967 kb on + strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 208.036 kb on - strand, within RR42_RS00855at 208.036 kb on - strand, within RR42_RS00855at 208.101 kb on - strand, within RR42_RS00855at 208.101 kb on - strand, within RR42_RS00855at 208.103 kb on + strand, within RR42_RS00855at 208.103 kb on + strand, within RR42_RS00855at 208.103 kb on + strand, within RR42_RS00855at 208.103 kb on + strand, within RR42_RS00855at 208.238 kb on + strand, within RR42_RS00855at 208.238 kb on + strand, within RR42_RS00855at 208.238 kb on + strand, within RR42_RS00855at 208.238 kb on + strand, within RR42_RS00855at 208.239 kb on - strand, within RR42_RS00855at 208.239 kb on - strand, within RR42_RS00855at 208.511 kb on + strandat 208.511 kb on + strandat 208.676 kb on - strandat 208.706 kb on + strandat 208.743 kb on + strandat 208.744 kb on - strandat 208.825 kb on + strandat 208.825 kb on + strandat 208.825 kb on + strandat 208.825 kb on + strandat 208.826 kb on - strandat 208.826 kb on - strandat 208.882 kb on + strand, within RR42_RS00860at 208.945 kb on - strand, within RR42_RS00860at 209.036 kb on - strand, within RR42_RS00860at 209.036 kb on - strand, within RR42_RS00860at 209.151 kb on - strand, within RR42_RS00860at 209.233 kb on + strandat 209.242 kb on - strandat 209.280 kb on - strandat 209.290 kb on - strandat 209.295 kb on - strandat 209.455 kb on + strand, within RR42_RS00865at 209.455 kb on + strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.591 kb on + strand, within RR42_RS00865at 209.591 kb on + strand, within RR42_RS00865at 209.592 kb on - strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.693 kb on + strand, within RR42_RS00865at 209.693 kb on + strand, within RR42_RS00865at 209.693 kb on + strand, within RR42_RS00865at 209.693 kb on + strand, within RR42_RS00865at 209.694 kb on - strand, within RR42_RS00865at 209.694 kb on - strand, within RR42_RS00865at 209.694 kb on - strand, within RR42_RS00865at 209.695 kb on + strand, within RR42_RS00865at 209.695 kb on + strand, within RR42_RS00865at 209.695 kb on + strand, within RR42_RS00865at 209.695 kb on + strand, within RR42_RS00865at 209.696 kb on - strand, within RR42_RS00865at 209.696 kb on - strand, within RR42_RS00865at 209.696 kb on - strand, within RR42_RS00865at 209.764 kb on - strandat 209.801 kb on + strandat 209.802 kb on - strandat 209.802 kb on - strandat 209.802 kb on - strandat 209.901 kb on + strandat 209.901 kb on + strandat 209.901 kb on + strandat 209.901 kb on + strandat 209.901 kb on + strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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207,830 + RR42_RS00855 0.28 +0.1
207,830 + RR42_RS00855 0.28 +0.5
207,831 - RR42_RS00855 0.28 -0.2
207,831 - RR42_RS00855 0.28 +0.5
207,831 - RR42_RS00855 0.28 +0.1
207,851 + RR42_RS00855 0.30 -0.1
207,851 + RR42_RS00855 0.30 +0.5
207,852 - RR42_RS00855 0.30 +0.3
207,852 - RR42_RS00855 0.30 +0.9
207,852 - RR42_RS00855 0.30 +1.4
207,853 + RR42_RS00855 0.30 +1.1
207,854 - RR42_RS00855 0.31 -0.1
207,854 - RR42_RS00855 0.31 -0.0
207,854 - RR42_RS00855 0.31 +1.4
207,960 - RR42_RS00855 0.40 +0.1
207,967 + RR42_RS00855 0.41 +1.5
207,967 + RR42_RS00855 0.41 +1.2
207,967 + RR42_RS00855 0.41 -1.5
207,967 + RR42_RS00855 0.41 +1.1
207,968 - RR42_RS00855 0.41 -0.1
207,968 - RR42_RS00855 0.41 -0.7
207,968 - RR42_RS00855 0.41 +0.1
207,968 - RR42_RS00855 0.41 +2.0
207,968 - RR42_RS00855 0.41 +1.0
208,036 - RR42_RS00855 0.47 +0.3
208,036 - RR42_RS00855 0.47 -0.1
208,101 - RR42_RS00855 0.54 -0.8
208,101 - RR42_RS00855 0.54 +1.4
208,103 + RR42_RS00855 0.54 -2.1
208,103 + RR42_RS00855 0.54 -0.5
208,103 + RR42_RS00855 0.54 -1.4
208,103 + RR42_RS00855 0.54 -0.1
208,238 + RR42_RS00855 0.66 +0.6
208,238 + RR42_RS00855 0.66 -0.7
208,238 + RR42_RS00855 0.66 -1.8
208,238 + RR42_RS00855 0.66 -0.3
208,239 - RR42_RS00855 0.66 -0.1
208,239 - RR42_RS00855 0.66 +0.7
208,511 + -0.4
208,511 + +1.4
208,676 - -1.2
208,706 + -0.5
208,743 + +1.0
208,744 - -0.7
208,825 + -0.6
208,825 + -0.2
208,825 + +0.6
208,825 + -0.9
208,826 - +0.5
208,826 - -0.5
208,882 + RR42_RS00860 0.19 -0.6
208,945 - RR42_RS00860 0.34 -0.6
209,036 - RR42_RS00860 0.55 -1.0
209,036 - RR42_RS00860 0.55 -0.8
209,151 - RR42_RS00860 0.81 -0.6
209,233 + +0.3
209,242 - -0.1
209,280 - +0.2
209,290 - -1.2
209,295 - +1.2
209,455 + RR42_RS00865 0.30 +0.6
209,455 + RR42_RS00865 0.30 -0.5
209,456 - RR42_RS00865 0.30 +0.2
209,456 - RR42_RS00865 0.30 -1.6
209,456 - RR42_RS00865 0.30 +1.4
209,456 - RR42_RS00865 0.30 -0.0
209,591 + RR42_RS00865 0.59 +0.2
209,591 + RR42_RS00865 0.59 +0.9
209,592 - RR42_RS00865 0.60 -0.6
209,691 + RR42_RS00865 0.81 +0.2
209,691 + RR42_RS00865 0.81 +0.9
209,691 + RR42_RS00865 0.81 +2.2
209,691 + RR42_RS00865 0.81 +0.2
209,691 + RR42_RS00865 0.81 -0.2
209,691 + RR42_RS00865 0.81 +0.5
209,691 + RR42_RS00865 0.81 -0.4
209,691 + RR42_RS00865 0.81 -0.1
209,692 - RR42_RS00865 0.81 +0.5
209,692 - RR42_RS00865 0.81 +0.0
209,692 - RR42_RS00865 0.81 -0.4
209,692 - RR42_RS00865 0.81 +0.6
209,692 - RR42_RS00865 0.81 -0.5
209,692 - RR42_RS00865 0.81 +0.6
209,692 - RR42_RS00865 0.81 -0.5
209,692 - RR42_RS00865 0.81 +0.9
209,692 - RR42_RS00865 0.81 +1.0
209,692 - RR42_RS00865 0.81 -1.8
209,692 - RR42_RS00865 0.81 -2.1
209,692 - RR42_RS00865 0.81 +0.6
209,692 - RR42_RS00865 0.81 -1.0
209,693 + RR42_RS00865 0.82 +0.1
209,693 + RR42_RS00865 0.82 -1.3
209,693 + RR42_RS00865 0.82 +0.1
209,693 + RR42_RS00865 0.82 +1.4
209,694 - RR42_RS00865 0.82 -0.2
209,694 - RR42_RS00865 0.82 -1.3
209,694 - RR42_RS00865 0.82 -0.3
209,695 + RR42_RS00865 0.82 +2.4
209,695 + RR42_RS00865 0.82 +0.4
209,695 + RR42_RS00865 0.82 +0.8
209,695 + RR42_RS00865 0.82 -0.9
209,696 - RR42_RS00865 0.82 +0.0
209,696 - RR42_RS00865 0.82 +0.4
209,696 - RR42_RS00865 0.82 +0.6
209,764 - -1.6
209,801 + -0.2
209,802 - +0.6
209,802 - -0.0
209,802 - +0.2
209,901 + +0.4
209,901 + -0.0
209,901 + +1.0
209,901 + +0.1
209,901 + +0.6
209,902 - -0.3
209,902 - +0.8
209,902 - -2.5
209,902 - -0.2
209,902 - -0.8
209,902 - +2.4
209,902 - -0.4

Or see this region's nucleotide sequence