Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04862

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04861 and H281DRAFT_04862 are separated by 263 nucleotidesH281DRAFT_04862 and H281DRAFT_04863 are separated by 156 nucleotides H281DRAFT_04861: H281DRAFT_04861 - starch synthase, at 1,480 to 2,940 _04861 H281DRAFT_04862: H281DRAFT_04862 - Pyridoxal kinase, at 3,204 to 4,070 _04862 H281DRAFT_04863: H281DRAFT_04863 - hypothetical protein, at 4,227 to 4,688 _04863 Position (kb) 3 4 5Strain fitness (log2 ratio) -1 0 1at 2.208 kb on - strandat 2.254 kb on + strand, within H281DRAFT_04861at 2.255 kb on - strand, within H281DRAFT_04861at 2.256 kb on + strand, within H281DRAFT_04861at 2.396 kb on + strand, within H281DRAFT_04861at 2.483 kb on + strand, within H281DRAFT_04861at 3.053 kb on + strandat 3.054 kb on - strandat 3.201 kb on - strandat 3.285 kb on - strandat 3.528 kb on + strand, within H281DRAFT_04862at 4.239 kb on - strandat 4.277 kb on + strand, within H281DRAFT_04863at 4.387 kb on - strand, within H281DRAFT_04863at 4.387 kb on - strand, within H281DRAFT_04863at 4.492 kb on - strand, within H281DRAFT_04863at 4.817 kb on + strandat 4.817 kb on + strandat 4.818 kb on - strandat 4.818 kb on - strandat 4.818 kb on - strandat 5.022 kb on + strandat 5.022 kb on + strandat 5.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,208 - -1.4
2,254 + H281DRAFT_04861 0.53 +0.1
2,255 - H281DRAFT_04861 0.53 -1.0
2,256 + H281DRAFT_04861 0.53 +1.0
2,396 + H281DRAFT_04861 0.63 +0.3
2,483 + H281DRAFT_04861 0.69 +0.2
3,053 + +0.5
3,054 - -0.6
3,201 - -0.4
3,285 - -0.5
3,528 + H281DRAFT_04862 0.37 -0.8
4,239 - +0.4
4,277 + H281DRAFT_04863 0.11 -0.0
4,387 - H281DRAFT_04863 0.35 +0.3
4,387 - H281DRAFT_04863 0.35 -0.0
4,492 - H281DRAFT_04863 0.57 +0.0
4,817 + -0.8
4,817 + -0.4
4,818 - +0.8
4,818 - +0.1
4,818 - +0.7
5,022 + +0.4
5,022 + -0.1
5,023 - -0.3

Or see this region's nucleotide sequence