Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04662

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04660 and H281DRAFT_04661 overlap by 8 nucleotidesH281DRAFT_04661 and H281DRAFT_04662 are separated by 148 nucleotidesH281DRAFT_04662 and H281DRAFT_04663 are separated by 375 nucleotidesH281DRAFT_04663 and H281DRAFT_04664 are separated by 8 nucleotides H281DRAFT_04660: H281DRAFT_04660 - paraquat-inducible protein B, at 61,883 to 63,541 _04660 H281DRAFT_04661: H281DRAFT_04661 - paraquat-inducible protein A, at 63,534 to 64,043 _04661 H281DRAFT_04662: H281DRAFT_04662 - paraquat-inducible protein A, at 64,192 to 64,971 _04662 H281DRAFT_04663: H281DRAFT_04663 - cytochrome b561, at 65,347 to 65,907 _04663 H281DRAFT_04664: H281DRAFT_04664 - Polyisoprenoid-binding protein YceI, at 65,916 to 66,479 _04664 Position (kb) 64 65Strain fitness (log2 ratio) -2 -1 0 1at 63.218 kb on + strand, within H281DRAFT_04660at 63.219 kb on - strand, within H281DRAFT_04660at 63.219 kb on - strand, within H281DRAFT_04660at 63.279 kb on + strand, within H281DRAFT_04660at 63.279 kb on + strand, within H281DRAFT_04660at 63.280 kb on - strand, within H281DRAFT_04660at 63.280 kb on - strand, within H281DRAFT_04660at 63.566 kb on + strandat 63.567 kb on - strandat 63.971 kb on + strand, within H281DRAFT_04661at 63.971 kb on + strand, within H281DRAFT_04661at 63.971 kb on + strand, within H281DRAFT_04661at 64.002 kb on - strandat 64.002 kb on - strandat 64.004 kb on - strandat 64.004 kb on - strandat 64.178 kb on - strandat 64.252 kb on + strandat 64.252 kb on + strandat 64.253 kb on - strandat 64.253 kb on - strandat 64.625 kb on + strand, within H281DRAFT_04662at 64.625 kb on + strand, within H281DRAFT_04662at 64.625 kb on + strand, within H281DRAFT_04662at 64.749 kb on + strand, within H281DRAFT_04662at 64.749 kb on + strand, within H281DRAFT_04662at 64.750 kb on - strandat 64.862 kb on + strand, within H281DRAFT_04662at 64.862 kb on + strand, within H281DRAFT_04662at 64.928 kb on - strandat 64.933 kb on - strandat 64.990 kb on + strandat 64.991 kb on - strandat 64.991 kb on - strandat 64.991 kb on - strandat 64.991 kb on - strandat 64.998 kb on + strandat 65.032 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.063 kb on - strandat 65.065 kb on + strandat 65.297 kb on + strandat 65.298 kb on - strandat 65.328 kb on + strandat 65.329 kb on - strandat 65.383 kb on + strandat 65.384 kb on - strandat 65.511 kb on + strand, within H281DRAFT_04663at 65.531 kb on + strand, within H281DRAFT_04663at 65.647 kb on + strand, within H281DRAFT_04663at 65.648 kb on - strand, within H281DRAFT_04663at 65.651 kb on + strand, within H281DRAFT_04663at 65.651 kb on + strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.686 kb on + strand, within H281DRAFT_04663at 65.686 kb on + strand, within H281DRAFT_04663at 65.687 kb on - strand, within H281DRAFT_04663at 65.803 kb on + strand, within H281DRAFT_04663at 65.804 kb on - strand, within H281DRAFT_04663at 65.804 kb on - strand, within H281DRAFT_04663at 65.804 kb on - strand, within H281DRAFT_04663at 65.834 kb on + strand, within H281DRAFT_04663at 65.834 kb on + strand, within H281DRAFT_04663at 65.905 kb on + strandat 65.906 kb on - strandat 65.906 kb on - strandat 65.932 kb on - strandat 65.938 kb on - strandat 65.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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63,218 + H281DRAFT_04660 0.80 -0.4
63,219 - H281DRAFT_04660 0.81 -0.6
63,219 - H281DRAFT_04660 0.81 +0.1
63,279 + H281DRAFT_04660 0.84 -1.8
63,279 + H281DRAFT_04660 0.84 -0.2
63,280 - H281DRAFT_04660 0.84 -0.5
63,280 - H281DRAFT_04660 0.84 -1.3
63,566 + -0.2
63,567 - +0.0
63,971 + H281DRAFT_04661 0.86 -2.0
63,971 + H281DRAFT_04661 0.86 -1.2
63,971 + H281DRAFT_04661 0.86 -0.1
64,002 - -0.6
64,002 - -0.2
64,004 - -0.7
64,004 - -0.6
64,178 - +1.1
64,252 + +0.5
64,252 + -0.5
64,253 - +0.6
64,253 - -0.4
64,625 + H281DRAFT_04662 0.56 -0.8
64,625 + H281DRAFT_04662 0.56 -0.5
64,625 + H281DRAFT_04662 0.56 -0.9
64,749 + H281DRAFT_04662 0.71 -0.6
64,749 + H281DRAFT_04662 0.71 -0.2
64,750 - -1.1
64,862 + H281DRAFT_04662 0.86 -0.2
64,862 + H281DRAFT_04662 0.86 -0.3
64,928 - -0.0
64,933 - -0.2
64,990 + -0.5
64,991 - -0.1
64,991 - +0.6
64,991 - -0.4
64,991 - -0.9
64,998 + +0.2
65,032 + -0.0
65,062 + +0.8
65,062 + +1.4
65,062 + -0.3
65,062 + -1.3
65,062 + -0.0
65,062 + -1.0
65,063 - +0.4
65,065 + -0.6
65,297 + -0.2
65,298 - -1.3
65,328 + -0.7
65,329 - +0.3
65,383 + +0.6
65,384 - +1.1
65,511 + H281DRAFT_04663 0.29 -2.4
65,531 + H281DRAFT_04663 0.33 +1.0
65,647 + H281DRAFT_04663 0.53 +0.1
65,648 - H281DRAFT_04663 0.54 -2.7
65,651 + H281DRAFT_04663 0.54 -0.6
65,651 + H281DRAFT_04663 0.54 -0.3
65,652 - H281DRAFT_04663 0.54 +0.6
65,652 - H281DRAFT_04663 0.54 +0.3
65,652 - H281DRAFT_04663 0.54 -1.1
65,652 - H281DRAFT_04663 0.54 -0.7
65,652 - H281DRAFT_04663 0.54 +1.4
65,652 - H281DRAFT_04663 0.54 +0.2
65,686 + H281DRAFT_04663 0.60 +0.3
65,686 + H281DRAFT_04663 0.60 -0.2
65,687 - H281DRAFT_04663 0.61 +0.0
65,803 + H281DRAFT_04663 0.81 +0.2
65,804 - H281DRAFT_04663 0.81 +1.3
65,804 - H281DRAFT_04663 0.81 +0.2
65,804 - H281DRAFT_04663 0.81 -0.0
65,834 + H281DRAFT_04663 0.87 +0.9
65,834 + H281DRAFT_04663 0.87 -0.1
65,905 + -0.9
65,906 - +0.7
65,906 - -1.7
65,932 - -0.0
65,938 - +0.6
65,940 - +1.6

Or see this region's nucleotide sequence