Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02447

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02446 and H281DRAFT_02447 are separated by 391 nucleotidesH281DRAFT_02447 and H281DRAFT_02448 are separated by 185 nucleotidesH281DRAFT_02448 and H281DRAFT_02449 are separated by 328 nucleotides H281DRAFT_02446: H281DRAFT_02446 - phospholipase C, at 9,887 to 11,665 _02446 H281DRAFT_02447: H281DRAFT_02447 - Short-chain dehydrogenase, at 12,057 to 13,073 _02447 H281DRAFT_02448: H281DRAFT_02448 - Predicted periplasmic or secreted lipoprotein, at 13,259 to 13,627 _02448 H281DRAFT_02449: H281DRAFT_02449 - hypothetical protein, at 13,956 to 14,273 _02449 Position (kb) 12 13 14Strain fitness (log2 ratio) -1 0 1at 11.095 kb on - strand, within H281DRAFT_02446at 11.197 kb on - strand, within H281DRAFT_02446at 11.347 kb on + strand, within H281DRAFT_02446at 11.463 kb on + strand, within H281DRAFT_02446at 11.464 kb on - strand, within H281DRAFT_02446at 11.712 kb on + strandat 11.712 kb on + strandat 11.713 kb on - strandat 11.713 kb on - strandat 11.713 kb on - strandat 11.713 kb on - strandat 11.819 kb on + strandat 11.819 kb on + strandat 11.826 kb on + strandat 11.838 kb on + strandat 11.838 kb on + strandat 11.842 kb on - strandat 11.940 kb on - strandat 11.988 kb on + strandat 12.243 kb on + strand, within H281DRAFT_02447at 12.354 kb on + strand, within H281DRAFT_02447at 12.354 kb on + strand, within H281DRAFT_02447at 12.528 kb on + strand, within H281DRAFT_02447at 12.528 kb on + strand, within H281DRAFT_02447at 12.528 kb on + strand, within H281DRAFT_02447at 12.529 kb on - strand, within H281DRAFT_02447at 12.550 kb on + strand, within H281DRAFT_02447at 12.550 kb on + strand, within H281DRAFT_02447at 12.560 kb on + strand, within H281DRAFT_02447at 12.638 kb on + strand, within H281DRAFT_02447at 12.766 kb on - strand, within H281DRAFT_02447at 12.822 kb on + strand, within H281DRAFT_02447at 12.822 kb on + strand, within H281DRAFT_02447at 12.822 kb on + strand, within H281DRAFT_02447at 12.850 kb on + strand, within H281DRAFT_02447at 12.850 kb on + strandat 13.070 kb on - strandat 13.108 kb on + strandat 13.171 kb on + strandat 13.234 kb on + strandat 13.560 kb on + strand, within H281DRAFT_02448at 13.836 kb on - strandat 13.851 kb on - strandat 13.917 kb on - strandat 13.940 kb on + strandat 13.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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11,095 - H281DRAFT_02446 0.68 +0.3
11,197 - H281DRAFT_02446 0.74 +0.1
11,347 + H281DRAFT_02446 0.82 -0.0
11,463 + H281DRAFT_02446 0.89 +1.0
11,464 - H281DRAFT_02446 0.89 -0.3
11,712 + +0.1
11,712 + +0.3
11,713 - +0.1
11,713 - -0.4
11,713 - -1.5
11,713 - -0.5
11,819 + +0.5
11,819 + -0.1
11,826 + -0.5
11,838 + -0.1
11,838 + -0.0
11,842 - -0.4
11,940 - -0.4
11,988 + -1.0
12,243 + H281DRAFT_02447 0.18 +0.4
12,354 + H281DRAFT_02447 0.29 +0.3
12,354 + H281DRAFT_02447 0.29 -0.8
12,528 + H281DRAFT_02447 0.46 +0.6
12,528 + H281DRAFT_02447 0.46 -0.3
12,528 + H281DRAFT_02447 0.46 -0.6
12,529 - H281DRAFT_02447 0.46 +0.1
12,550 + H281DRAFT_02447 0.48 -1.4
12,550 + H281DRAFT_02447 0.48 -0.7
12,560 + H281DRAFT_02447 0.49 +0.6
12,638 + H281DRAFT_02447 0.57 -0.5
12,766 - H281DRAFT_02447 0.70 -0.7
12,822 + H281DRAFT_02447 0.75 -0.8
12,822 + H281DRAFT_02447 0.75 -0.1
12,822 + H281DRAFT_02447 0.75 -0.3
12,850 + H281DRAFT_02447 0.78 +0.0
12,850 + -1.4
13,070 - -0.0
13,108 + -1.7
13,171 + +0.4
13,234 + +0.1
13,560 + H281DRAFT_02448 0.82 -0.1
13,836 - -0.4
13,851 - -0.4
13,917 - +0.0
13,940 + -0.5
13,941 - -0.2

Or see this region's nucleotide sequence