Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09300 and PGA1_c09310 are separated by 101 nucleotides PGA1_c09310 and PGA1_c09320 are separated by 98 nucleotides PGA1_c09320 and PGA1_c09330 are separated by 1 nucleotides PGA1_c09330 and PGA1_c09340 are separated by 202 nucleotides
PGA1_c09300: PGA1_c09300 - Peroxiredoxin, at 951,088 to 951,624
_c09300
PGA1_c09310: PGA1_c09310 - transcription regulator, AraC family, at 951,726 to 952,457
_c09310
PGA1_c09320: PGA1_c09320 - imidazole glycerol phosphate synthase subunit HisH, at 952,556 to 953,194
_c09320
PGA1_c09330: PGA1_c09330 - imidazoleglycerol-phosphate dehydratase HisB, at 953,196 to 953,783
_c09330
PGA1_c09340: PGA1_c09340 - putative transcriptional regulator, AsnC family, at 953,986 to 954,225
_c09340
Position (kb) 952
953
954 Strain fitness (log2 ratio) -1
0
1
2
3 at 951.556 kb on - strand, within PGA1_c09300 at 951.589 kb on + strand at 951.589 kb on + strand at 951.589 kb on + strand at 951.594 kb on + strand at 951.597 kb on - strand at 951.597 kb on - strand at 951.628 kb on - strand at 951.632 kb on + strand at 951.679 kb on + strand at 951.739 kb on - strand at 951.742 kb on + strand at 951.747 kb on - strand at 951.783 kb on - strand at 951.797 kb on + strand at 951.797 kb on + strand at 951.839 kb on - strand, within PGA1_c09310 at 951.842 kb on + strand, within PGA1_c09310 at 951.882 kb on + strand, within PGA1_c09310 at 951.895 kb on - strand, within PGA1_c09310 at 951.895 kb on - strand, within PGA1_c09310 at 951.910 kb on + strand, within PGA1_c09310 at 951.918 kb on - strand, within PGA1_c09310 at 951.984 kb on + strand, within PGA1_c09310 at 951.990 kb on + strand, within PGA1_c09310 at 951.990 kb on + strand, within PGA1_c09310 at 952.018 kb on - strand, within PGA1_c09310 at 952.066 kb on - strand, within PGA1_c09310 at 952.125 kb on - strand, within PGA1_c09310 at 952.193 kb on + strand, within PGA1_c09310 at 952.214 kb on + strand, within PGA1_c09310 at 952.331 kb on + strand, within PGA1_c09310 at 952.353 kb on + strand, within PGA1_c09310 at 952.381 kb on + strand, within PGA1_c09310 at 952.389 kb on + strand at 952.412 kb on + strand at 952.412 kb on + strand at 952.413 kb on + strand at 952.413 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.425 kb on + strand at 952.425 kb on + strand at 952.450 kb on + strand at 952.452 kb on + strand at 952.469 kb on + strand at 952.523 kb on - strand at 952.523 kb on - strand at 952.561 kb on - strand at 953.820 kb on - strand at 953.837 kb on + strand at 953.973 kb on + strand at 953.979 kb on - strand at 953.979 kb on - strand at 953.981 kb on - strand at 953.981 kb on - strand at 953.994 kb on - strand at 954.030 kb on - strand, within PGA1_c09340 at 954.040 kb on - strand, within PGA1_c09340 at 954.041 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.081 kb on + strand, within PGA1_c09340 at 954.087 kb on + strand, within PGA1_c09340 at 954.165 kb on + strand, within PGA1_c09340 at 954.173 kb on - strand, within PGA1_c09340 at 954.190 kb on - strand, within PGA1_c09340
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 951,556 - PGA1_c09300 0.87 +3.4 951,589 + -0.2 951,589 + -0.6 951,589 + +1.4 951,594 + +1.4 951,597 - -1.7 951,597 - -0.9 951,628 - -1.2 951,632 + -0.0 951,679 + +0.1 951,739 - -0.3 951,742 + -0.2 951,747 - -1.2 951,783 - -1.4 951,797 + +1.2 951,797 + +0.0 951,839 - PGA1_c09310 0.15 +0.8 951,842 + PGA1_c09310 0.16 -1.2 951,882 + PGA1_c09310 0.21 +0.4 951,895 - PGA1_c09310 0.23 -0.2 951,895 - PGA1_c09310 0.23 -0.7 951,910 + PGA1_c09310 0.25 +0.5 951,918 - PGA1_c09310 0.26 -0.7 951,984 + PGA1_c09310 0.35 +0.9 951,990 + PGA1_c09310 0.36 +0.1 951,990 + PGA1_c09310 0.36 +0.1 952,018 - PGA1_c09310 0.40 -0.4 952,066 - PGA1_c09310 0.46 +1.4 952,125 - PGA1_c09310 0.55 +0.2 952,193 + PGA1_c09310 0.64 -1.7 952,214 + PGA1_c09310 0.67 -0.2 952,331 + PGA1_c09310 0.83 -1.6 952,353 + PGA1_c09310 0.86 -0.4 952,381 + PGA1_c09310 0.89 -0.2 952,389 + +0.3 952,412 + +1.8 952,412 + +0.3 952,413 + -0.2 952,413 + +1.2 952,420 - -0.2 952,420 - +1.1 952,425 + +0.3 952,425 + -0.2 952,450 + +0.4 952,452 + +0.4 952,469 + +0.4 952,523 - -0.2 952,523 - +1.4 952,561 - +1.1 953,820 - +0.8 953,837 + -0.2 953,973 + -1.4 953,979 - -1.3 953,979 - +0.6 953,981 - +1.8 953,981 - -1.4 953,994 - -1.2 954,030 - PGA1_c09340 0.18 -0.7 954,040 - PGA1_c09340 0.23 -0.3 954,041 + PGA1_c09340 0.23 -0.2 954,050 + PGA1_c09340 0.27 -0.2 954,050 + PGA1_c09340 0.27 -0.3 954,050 + PGA1_c09340 0.27 +0.1 954,058 - PGA1_c09340 0.30 +0.4 954,058 - PGA1_c09340 0.30 +0.4 954,081 + PGA1_c09340 0.40 +1.2 954,087 + PGA1_c09340 0.42 +0.3 954,165 + PGA1_c09340 0.75 -0.9 954,173 - PGA1_c09340 0.78 +0.8 954,190 - PGA1_c09340 0.85 -0.6
Or see this region's nucleotide sequence