Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08920 and PGA1_c08930 are separated by 1 nucleotides PGA1_c08930 and PGA1_c08940 overlap by 4 nucleotides PGA1_c08940 and PGA1_c08950 are separated by 232 nucleotides PGA1_c08950 and PGA1_c08960 are separated by 426 nucleotides
PGA1_c08920: PGA1_c08920 - 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB, at 922,039 to 923,160
_c08920
PGA1_c08930: PGA1_c08930 - 6,7-dimethyl-8-ribityllumazine synthase RibH, at 923,162 to 923,713
_c08930
PGA1_c08940: PGA1_c08940 - N utilization substance protein B homolog, at 923,710 to 924,201
_c08940
PGA1_c08950: PGA1_c08950 - hypothetical protein, at 924,434 to 924,763
_c08950
PGA1_c08960: PGA1_c08960 - DNA repair endonuclease mmcB (DUF1052) <small>(from data)</small>, at 925,190 to 925,645
_c08960
Position (kb) 923
924
925 Strain fitness (log2 ratio) -2
-1
0
1
2 at 922.718 kb on - strand, within PGA1_c08920 at 922.826 kb on - strand, within PGA1_c08920 at 922.828 kb on + strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.915 kb on - strand, within PGA1_c08920 at 922.915 kb on - strand, within PGA1_c08920 at 922.970 kb on - strand, within PGA1_c08920 at 922.986 kb on + strand, within PGA1_c08920 at 923.006 kb on + strand, within PGA1_c08920 at 923.006 kb on + strand, within PGA1_c08920 at 923.014 kb on - strand, within PGA1_c08920 at 923.014 kb on - strand, within PGA1_c08920 at 923.038 kb on - strand, within PGA1_c08920 at 923.053 kb on - strand at 923.111 kb on + strand at 923.111 kb on + strand at 923.111 kb on + strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.153 kb on - strand at 923.171 kb on + strand at 923.179 kb on - strand at 923.303 kb on + strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.337 kb on + strand, within PGA1_c08930 at 923.399 kb on + strand, within PGA1_c08930 at 923.407 kb on - strand, within PGA1_c08930 at 923.407 kb on - strand, within PGA1_c08930 at 923.432 kb on - strand, within PGA1_c08930 at 923.442 kb on - strand, within PGA1_c08930 at 923.481 kb on + strand, within PGA1_c08930 at 923.484 kb on + strand, within PGA1_c08930 at 923.488 kb on - strand, within PGA1_c08930 at 924.224 kb on + strand at 924.224 kb on + strand at 924.224 kb on + strand at 924.227 kb on + strand at 924.229 kb on + strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.237 kb on + strand at 924.237 kb on - strand at 924.237 kb on - strand at 924.245 kb on - strand at 924.282 kb on + strand at 924.283 kb on - strand at 924.417 kb on + strand at 924.502 kb on - strand, within PGA1_c08950 at 924.552 kb on - strand, within PGA1_c08950 at 924.581 kb on + strand, within PGA1_c08950 at 924.591 kb on - strand, within PGA1_c08950 at 924.706 kb on + strand, within PGA1_c08950 at 924.947 kb on - strand at 925.023 kb on + strand at 925.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 922,718 - PGA1_c08920 0.61 +1.2 922,826 - PGA1_c08920 0.70 -0.1 922,828 + PGA1_c08920 0.70 +0.9 922,836 - PGA1_c08920 0.71 -1.8 922,836 - PGA1_c08920 0.71 +0.2 922,836 - PGA1_c08920 0.71 +0.2 922,915 - PGA1_c08920 0.78 +2.0 922,915 - PGA1_c08920 0.78 +1.0 922,970 - PGA1_c08920 0.83 +0.1 922,986 + PGA1_c08920 0.84 +1.0 923,006 + PGA1_c08920 0.86 -1.6 923,006 + PGA1_c08920 0.86 -0.1 923,014 - PGA1_c08920 0.87 -0.4 923,014 - PGA1_c08920 0.87 -0.6 923,038 - PGA1_c08920 0.89 +1.1 923,053 - -1.0 923,111 + -0.4 923,111 + -0.9 923,111 + -1.6 923,119 - +0.2 923,119 - -0.1 923,119 - +0.0 923,119 - +0.4 923,119 - +0.7 923,119 - -0.6 923,119 - -0.7 923,153 - +0.8 923,171 + +2.2 923,179 - -0.1 923,303 + PGA1_c08930 0.26 -0.2 923,318 - PGA1_c08930 0.28 +0.8 923,318 - PGA1_c08930 0.28 +0.9 923,318 - PGA1_c08930 0.28 -0.1 923,337 + PGA1_c08930 0.32 -0.7 923,399 + PGA1_c08930 0.43 +0.4 923,407 - PGA1_c08930 0.44 -1.6 923,407 - PGA1_c08930 0.44 +0.9 923,432 - PGA1_c08930 0.49 +0.4 923,442 - PGA1_c08930 0.51 +0.9 923,481 + PGA1_c08930 0.58 +1.4 923,484 + PGA1_c08930 0.58 -1.9 923,488 - PGA1_c08930 0.59 -0.6 924,224 + +0.0 924,224 + -1.0 924,224 + +1.2 924,227 + -0.6 924,229 + +2.4 924,232 - -0.1 924,232 - -1.1 924,232 - -1.4 924,232 - -0.6 924,237 + +0.0 924,237 - +1.2 924,237 - +0.9 924,245 - +1.1 924,282 + +0.6 924,283 - +0.4 924,417 + -0.9 924,502 - PGA1_c08950 0.21 -0.0 924,552 - PGA1_c08950 0.36 +0.2 924,581 + PGA1_c08950 0.45 +0.9 924,591 - PGA1_c08950 0.48 -0.7 924,706 + PGA1_c08950 0.82 -0.1 924,947 - +1.1 925,023 + +0.9 925,137 + -1.1
Or see this region's nucleotide sequence