Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08180

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08170 and PGA1_c08180 are separated by 109 nucleotidesPGA1_c08180 and PGA1_c08190 are separated by 4 nucleotidesPGA1_c08190 and PGA1_c08200 are separated by 364 nucleotides PGA1_c08170: PGA1_c08170 - aerobic cobaltochelatase subunit CobN, at 844,797 to 848,042 _c08170 PGA1_c08180: PGA1_c08180 - cobalamin biosynthesis protein CobW, at 848,152 to 849,231 _c08180 PGA1_c08190: PGA1_c08190 - Predicted metal-binding protein, at 849,236 to 849,637 _c08190 PGA1_c08200: PGA1_c08200 - cob(I)yrinic acid a,c-diamide adenosyltransferase CobO, at 850,002 to 850,637 _c08200 Position (kb) 848 849 850Strain fitness (log2 ratio) -1 0 1at 848.052 kb on - strandat 848.052 kb on - strandat 849.460 kb on - strand, within PGA1_c08190at 849.465 kb on - strand, within PGA1_c08190at 849.476 kb on + strand, within PGA1_c08190at 849.776 kb on + strandat 849.846 kb on + strandat 849.876 kb on - strandat 849.902 kb on - strandat 849.951 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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848,052 - -0.7
848,052 - -0.5
849,460 - PGA1_c08190 0.56 -0.9
849,465 - PGA1_c08190 0.57 -0.4
849,476 + PGA1_c08190 0.60 -1.4
849,776 + -1.7
849,846 + -0.5
849,876 - +0.5
849,902 - -1.1
849,951 + -1.2

Or see this region's nucleotide sequence