Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07790

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07780 and PGA1_c07790 are separated by 23 nucleotidesPGA1_c07790 and PGA1_c07800 are separated by 128 nucleotides PGA1_c07780: PGA1_c07780 - TRAP transporter, subunit DctP, at 805,111 to 806,256 _c07780 PGA1_c07790: PGA1_c07790 - hypothetical protein, at 806,280 to 806,465 _c07790 PGA1_c07800: PGA1_c07800 - putative transcriptional regulator, lacI family, at 806,594 to 807,619 _c07800 Position (kb) 806 807Strain fitness (log2 ratio) -2 -1 0 1 2 3at 805.283 kb on + strand, within PGA1_c07780at 805.286 kb on - strand, within PGA1_c07780at 805.289 kb on + strand, within PGA1_c07780at 805.289 kb on + strand, within PGA1_c07780at 805.297 kb on - strand, within PGA1_c07780at 805.315 kb on + strand, within PGA1_c07780at 805.342 kb on + strand, within PGA1_c07780at 805.381 kb on + strand, within PGA1_c07780at 805.381 kb on + strand, within PGA1_c07780at 805.381 kb on + strand, within PGA1_c07780at 805.381 kb on + strand, within PGA1_c07780at 805.389 kb on - strand, within PGA1_c07780at 805.389 kb on - strand, within PGA1_c07780at 805.389 kb on - strand, within PGA1_c07780at 805.392 kb on - strand, within PGA1_c07780at 805.403 kb on + strand, within PGA1_c07780at 805.403 kb on + strand, within PGA1_c07780at 805.403 kb on + strand, within PGA1_c07780at 805.435 kb on - strand, within PGA1_c07780at 805.435 kb on - strand, within PGA1_c07780at 805.449 kb on - strand, within PGA1_c07780at 805.455 kb on + strand, within PGA1_c07780at 805.455 kb on + strand, within PGA1_c07780at 805.456 kb on + strand, within PGA1_c07780at 805.464 kb on - strand, within PGA1_c07780at 805.495 kb on + strand, within PGA1_c07780at 805.495 kb on + strand, within PGA1_c07780at 805.495 kb on + strand, within PGA1_c07780at 805.565 kb on + strand, within PGA1_c07780at 805.570 kb on + strand, within PGA1_c07780at 805.577 kb on + strand, within PGA1_c07780at 805.685 kb on + strand, within PGA1_c07780at 805.726 kb on + strand, within PGA1_c07780at 805.726 kb on + strand, within PGA1_c07780at 805.734 kb on - strand, within PGA1_c07780at 805.762 kb on - strand, within PGA1_c07780at 805.767 kb on + strand, within PGA1_c07780at 805.767 kb on + strand, within PGA1_c07780at 805.812 kb on + strand, within PGA1_c07780at 805.820 kb on - strand, within PGA1_c07780at 805.825 kb on + strand, within PGA1_c07780at 805.835 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.858 kb on + strand, within PGA1_c07780at 805.903 kb on - strand, within PGA1_c07780at 805.904 kb on - strand, within PGA1_c07780at 805.907 kb on - strand, within PGA1_c07780at 805.950 kb on - strand, within PGA1_c07780at 806.047 kb on + strand, within PGA1_c07780at 806.047 kb on + strand, within PGA1_c07780at 806.053 kb on - strand, within PGA1_c07780at 806.055 kb on + strandat 806.063 kb on - strand, within PGA1_c07780at 806.070 kb on + strand, within PGA1_c07780at 806.101 kb on - strand, within PGA1_c07780at 806.136 kb on + strand, within PGA1_c07780at 806.141 kb on + strand, within PGA1_c07780at 806.141 kb on + strand, within PGA1_c07780at 806.141 kb on + strand, within PGA1_c07780at 806.143 kb on + strandat 806.144 kb on - strandat 806.153 kb on + strandat 806.167 kb on + strandat 806.172 kb on + strandat 806.172 kb on + strandat 806.180 kb on - strandat 806.425 kb on - strand, within PGA1_c07790at 806.447 kb on - strandat 806.449 kb on + strandat 806.479 kb on - strandat 806.586 kb on + strandat 806.638 kb on + strandat 806.638 kb on - strandat 806.658 kb on + strandat 806.663 kb on + strandat 806.663 kb on + strandat 806.663 kb on + strandat 806.663 kb on + strandat 806.787 kb on + strand, within PGA1_c07800at 806.818 kb on + strand, within PGA1_c07800at 806.841 kb on + strand, within PGA1_c07800at 806.841 kb on + strand, within PGA1_c07800at 806.851 kb on - strand, within PGA1_c07800at 806.851 kb on - strand, within PGA1_c07800at 806.877 kb on + strand, within PGA1_c07800at 806.877 kb on + strand, within PGA1_c07800at 806.901 kb on - strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.918 kb on - strand, within PGA1_c07800at 806.918 kb on - strand, within PGA1_c07800at 806.918 kb on - strand, within PGA1_c07800at 806.927 kb on + strand, within PGA1_c07800at 806.927 kb on + strand, within PGA1_c07800at 806.927 kb on + strand, within PGA1_c07800at 806.932 kb on + strand, within PGA1_c07800at 806.935 kb on - strand, within PGA1_c07800at 806.960 kb on + strand, within PGA1_c07800at 806.982 kb on - strand, within PGA1_c07800at 807.032 kb on - strand, within PGA1_c07800at 807.081 kb on - strand, within PGA1_c07800at 807.264 kb on + strand, within PGA1_c07800at 807.305 kb on - strand, within PGA1_c07800at 807.322 kb on + strand, within PGA1_c07800at 807.388 kb on - strand, within PGA1_c07800at 807.434 kb on - strand, within PGA1_c07800

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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805,283 + PGA1_c07780 0.15 -0.3
805,286 - PGA1_c07780 0.15 -2.1
805,289 + PGA1_c07780 0.16 +2.2
805,289 + PGA1_c07780 0.16 +0.9
805,297 - PGA1_c07780 0.16 +1.0
805,315 + PGA1_c07780 0.18 -1.3
805,342 + PGA1_c07780 0.20 -0.9
805,381 + PGA1_c07780 0.24 +0.6
805,381 + PGA1_c07780 0.24 +0.5
805,381 + PGA1_c07780 0.24 +0.5
805,381 + PGA1_c07780 0.24 -0.1
805,389 - PGA1_c07780 0.24 +1.1
805,389 - PGA1_c07780 0.24 +1.3
805,389 - PGA1_c07780 0.24 +0.2
805,392 - PGA1_c07780 0.25 +0.1
805,403 + PGA1_c07780 0.25 +0.8
805,403 + PGA1_c07780 0.25 +1.5
805,403 + PGA1_c07780 0.25 -0.0
805,435 - PGA1_c07780 0.28 +0.4
805,435 - PGA1_c07780 0.28 -0.5
805,449 - PGA1_c07780 0.29 -1.3
805,455 + PGA1_c07780 0.30 -0.3
805,455 + PGA1_c07780 0.30 +0.6
805,456 + PGA1_c07780 0.30 +1.3
805,464 - PGA1_c07780 0.31 +0.5
805,495 + PGA1_c07780 0.34 -0.1
805,495 + PGA1_c07780 0.34 -2.0
805,495 + PGA1_c07780 0.34 +0.5
805,565 + PGA1_c07780 0.40 +0.5
805,570 + PGA1_c07780 0.40 +0.7
805,577 + PGA1_c07780 0.41 -0.3
805,685 + PGA1_c07780 0.50 -0.3
805,726 + PGA1_c07780 0.54 -0.5
805,726 + PGA1_c07780 0.54 +0.0
805,734 - PGA1_c07780 0.54 -0.1
805,762 - PGA1_c07780 0.57 +0.7
805,767 + PGA1_c07780 0.57 -0.9
805,767 + PGA1_c07780 0.57 +0.2
805,812 + PGA1_c07780 0.61 -0.5
805,820 - PGA1_c07780 0.62 -0.3
805,825 + PGA1_c07780 0.62 -0.4
805,835 + PGA1_c07780 0.63 +1.8
805,845 + PGA1_c07780 0.64 -0.3
805,845 + PGA1_c07780 0.64 -0.5
805,845 + PGA1_c07780 0.64 +0.8
805,845 + PGA1_c07780 0.64 -0.9
805,845 + PGA1_c07780 0.64 -1.1
805,845 + PGA1_c07780 0.64 -0.3
805,845 + PGA1_c07780 0.64 +0.2
805,853 - PGA1_c07780 0.65 +2.7
805,853 - PGA1_c07780 0.65 +0.1
805,853 - PGA1_c07780 0.65 +0.2
805,853 - PGA1_c07780 0.65 -0.1
805,858 + PGA1_c07780 0.65 -0.4
805,903 - PGA1_c07780 0.69 +0.6
805,904 - PGA1_c07780 0.69 -0.1
805,907 - PGA1_c07780 0.69 +0.9
805,950 - PGA1_c07780 0.73 +0.1
806,047 + PGA1_c07780 0.82 -0.1
806,047 + PGA1_c07780 0.82 -0.7
806,053 - PGA1_c07780 0.82 +0.5
806,055 + -1.1
806,063 - PGA1_c07780 0.83 +0.7
806,070 + PGA1_c07780 0.84 +1.5
806,101 - PGA1_c07780 0.86 +1.5
806,136 + PGA1_c07780 0.89 +0.5
806,141 + PGA1_c07780 0.90 +1.7
806,141 + PGA1_c07780 0.90 -1.1
806,141 + PGA1_c07780 0.90 -0.3
806,143 + +0.1
806,144 - -0.6
806,153 + +0.5
806,167 + -1.1
806,172 + -0.9
806,172 + +0.1
806,180 - +0.2
806,425 - PGA1_c07790 0.78 -1.1
806,447 - +0.7
806,449 + +0.1
806,479 - -2.1
806,586 + +0.5
806,638 + +1.5
806,638 - -0.1
806,658 + +0.5
806,663 + +0.5
806,663 + +1.1
806,663 + +0.6
806,663 + +0.9
806,787 + PGA1_c07800 0.19 +1.7
806,818 + PGA1_c07800 0.22 +1.1
806,841 + PGA1_c07800 0.24 +0.3
806,841 + PGA1_c07800 0.24 -0.3
806,851 - PGA1_c07800 0.25 +0.8
806,851 - PGA1_c07800 0.25 +1.1
806,877 + PGA1_c07800 0.28 +1.5
806,877 + PGA1_c07800 0.28 +1.5
806,901 - PGA1_c07800 0.30 +0.7
806,910 + PGA1_c07800 0.31 +1.4
806,910 + PGA1_c07800 0.31 +0.7
806,910 + PGA1_c07800 0.31 +1.3
806,910 + PGA1_c07800 0.31 -1.2
806,910 + PGA1_c07800 0.31 +0.1
806,918 - PGA1_c07800 0.32 +0.0
806,918 - PGA1_c07800 0.32 +1.5
806,918 - PGA1_c07800 0.32 -1.2
806,927 + PGA1_c07800 0.32 +0.8
806,927 + PGA1_c07800 0.32 -0.9
806,927 + PGA1_c07800 0.32 +0.2
806,932 + PGA1_c07800 0.33 +1.9
806,935 - PGA1_c07800 0.33 -0.9
806,960 + PGA1_c07800 0.36 +1.0
806,982 - PGA1_c07800 0.38 +0.9
807,032 - PGA1_c07800 0.43 +3.0
807,081 - PGA1_c07800 0.47 +0.9
807,264 + PGA1_c07800 0.65 +0.5
807,305 - PGA1_c07800 0.69 +0.3
807,322 + PGA1_c07800 0.71 +0.5
807,388 - PGA1_c07800 0.77 +1.0
807,434 - PGA1_c07800 0.82 -2.2

Or see this region's nucleotide sequence