Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00710 and PGA1_c00720 are separated by 57 nucleotides PGA1_c00720 and PGA1_c00730 are separated by 86 nucleotides PGA1_c00730 and PGA1_c00740 are separated by 4 nucleotides PGA1_c00740 and PGA1_c00750 are separated by 188 nucleotides
PGA1_c00710: PGA1_c00710 - ATP synthase a chain, at 70,442 to 71,245
_c00710
PGA1_c00720: PGA1_c00720 - ATP synthase C chain, at 71,303 to 71,527
_c00720
PGA1_c00730: PGA1_c00730 - ATP synthase B' chain, at 71,614 to 72,159
_c00730
PGA1_c00740: PGA1_c00740 - ATP synthase B chain, at 72,164 to 72,724
_c00740
PGA1_c00750: PGA1_c00750 - UDP-N-acetylglucosamine acyltransferase-like protein, at 72,913 to 73,662
_c00750
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.562 kb on + strand at 71.564 kb on + strand at 71.564 kb on + strand at 72.706 kb on - strand at 72.718 kb on + strand at 72.742 kb on - strand at 72.810 kb on - strand at 72.812 kb on - strand at 72.857 kb on - strand at 72.869 kb on + strand at 72.877 kb on - strand at 72.879 kb on + strand at 72.887 kb on - strand at 72.949 kb on + strand at 72.953 kb on + strand at 72.956 kb on - strand at 73.032 kb on - strand, within PGA1_c00750 at 73.073 kb on + strand, within PGA1_c00750 at 73.073 kb on + strand, within PGA1_c00750 at 73.073 kb on + strand, within PGA1_c00750 at 73.073 kb on + strand, within PGA1_c00750 at 73.073 kb on + strand, within PGA1_c00750 at 73.073 kb on + strand, within PGA1_c00750 at 73.081 kb on - strand, within PGA1_c00750 at 73.081 kb on - strand, within PGA1_c00750 at 73.083 kb on + strand, within PGA1_c00750 at 73.083 kb on + strand, within PGA1_c00750 at 73.083 kb on + strand, within PGA1_c00750
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 71,562 + +0.3 71,564 + -1.0 71,564 + -1.1 72,706 - -1.1 72,718 + +0.3 72,742 - -0.9 72,810 - +1.0 72,812 - -0.7 72,857 - -0.0 72,869 + -0.4 72,877 - +0.2 72,879 + -0.0 72,887 - +0.4 72,949 + -0.7 72,953 + -0.0 72,956 - -0.1 73,032 - PGA1_c00750 0.16 -1.9 73,073 + PGA1_c00750 0.21 -0.2 73,073 + PGA1_c00750 0.21 -2.1 73,073 + PGA1_c00750 0.21 -1.4 73,073 + PGA1_c00750 0.21 +1.8 73,073 + PGA1_c00750 0.21 +1.3 73,073 + PGA1_c00750 0.21 -1.9 73,081 - PGA1_c00750 0.22 +0.4 73,081 - PGA1_c00750 0.22 -0.2 73,083 + PGA1_c00750 0.23 +0.1 73,083 + PGA1_c00750 0.23 +0.9 73,083 + PGA1_c00750 0.23 +1.2
Or see this region's nucleotide sequence