Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00710

Experiment: DinoMM minimal media with L-Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c00690 and PGA1_c00700 are separated by 205 nucleotidesPGA1_c00700 and PGA1_c00710 are separated by 27 nucleotidesPGA1_c00710 and PGA1_c00720 are separated by 57 nucleotidesPGA1_c00720 and PGA1_c00730 are separated by 86 nucleotidesPGA1_c00730 and PGA1_c00740 are separated by 4 nucleotides PGA1_c00690: PGA1_c00690 - putative integral membrane protein, at 68,980 to 69,873 _c00690 PGA1_c00700: PGA1_c00700 - ATP synthase protein I, at 70,079 to 70,414 _c00700 PGA1_c00710: PGA1_c00710 - ATP synthase a chain, at 70,442 to 71,245 _c00710 PGA1_c00720: PGA1_c00720 - ATP synthase C chain, at 71,303 to 71,527 _c00720 PGA1_c00730: PGA1_c00730 - ATP synthase B' chain, at 71,614 to 72,159 _c00730 PGA1_c00740: PGA1_c00740 - ATP synthase B chain, at 72,164 to 72,724 _c00740 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2at 69.457 kb on + strand, within PGA1_c00690at 69.457 kb on + strand, within PGA1_c00690at 69.457 kb on + strand, within PGA1_c00690at 69.457 kb on + strand, within PGA1_c00690at 69.462 kb on + strand, within PGA1_c00690at 69.465 kb on - strand, within PGA1_c00690at 69.465 kb on - strand, within PGA1_c00690at 69.545 kb on - strand, within PGA1_c00690at 69.592 kb on + strand, within PGA1_c00690at 69.609 kb on + strand, within PGA1_c00690at 69.609 kb on + strand, within PGA1_c00690at 69.617 kb on - strand, within PGA1_c00690at 69.617 kb on - strand, within PGA1_c00690at 69.619 kb on - strand, within PGA1_c00690at 69.653 kb on - strand, within PGA1_c00690at 69.664 kb on - strand, within PGA1_c00690at 69.666 kb on + strand, within PGA1_c00690at 69.671 kb on + strand, within PGA1_c00690at 69.681 kb on + strand, within PGA1_c00690at 69.681 kb on + strand, within PGA1_c00690at 69.682 kb on - strand, within PGA1_c00690at 69.686 kb on + strand, within PGA1_c00690at 69.689 kb on - strand, within PGA1_c00690at 69.694 kb on - strand, within PGA1_c00690at 69.694 kb on - strand, within PGA1_c00690at 69.699 kb on - strand, within PGA1_c00690at 69.758 kb on - strand, within PGA1_c00690at 69.758 kb on - strand, within PGA1_c00690at 69.799 kb on + strandat 69.800 kb on + strandat 69.802 kb on - strandat 69.807 kb on - strandat 69.808 kb on - strandat 69.810 kb on + strandat 69.815 kb on + strandat 69.815 kb on + strandat 69.815 kb on + strandat 69.818 kb on - strandat 69.827 kb on - strandat 69.860 kb on + strandat 69.891 kb on - strandat 70.007 kb on + strandat 70.017 kb on - strandat 71.562 kb on + strandat 71.564 kb on + strandat 71.564 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
remove
69,457 + PGA1_c00690 0.53 +1.0
69,457 + PGA1_c00690 0.53 +2.6
69,457 + PGA1_c00690 0.53 -0.2
69,457 + PGA1_c00690 0.53 -0.2
69,462 + PGA1_c00690 0.54 -0.2
69,465 - PGA1_c00690 0.54 -2.5
69,465 - PGA1_c00690 0.54 +0.2
69,545 - PGA1_c00690 0.63 +0.3
69,592 + PGA1_c00690 0.68 -1.0
69,609 + PGA1_c00690 0.70 +0.2
69,609 + PGA1_c00690 0.70 -1.6
69,617 - PGA1_c00690 0.71 -0.4
69,617 - PGA1_c00690 0.71 -1.4
69,619 - PGA1_c00690 0.71 -1.2
69,653 - PGA1_c00690 0.75 -1.0
69,664 - PGA1_c00690 0.77 -0.6
69,666 + PGA1_c00690 0.77 +1.6
69,671 + PGA1_c00690 0.77 +2.0
69,681 + PGA1_c00690 0.78 -0.1
69,681 + PGA1_c00690 0.78 -0.4
69,682 - PGA1_c00690 0.79 +0.2
69,686 + PGA1_c00690 0.79 +0.1
69,689 - PGA1_c00690 0.79 +0.9
69,694 - PGA1_c00690 0.80 +1.0
69,694 - PGA1_c00690 0.80 -2.5
69,699 - PGA1_c00690 0.80 +0.2
69,758 - PGA1_c00690 0.87 -0.6
69,758 - PGA1_c00690 0.87 +0.8
69,799 + +1.3
69,800 + +0.2
69,802 - -0.5
69,807 - -0.6
69,808 - +0.2
69,810 + +0.7
69,815 + -1.0
69,815 + -1.4
69,815 + +0.8
69,818 - +0.5
69,827 - -0.2
69,860 + -1.0
69,891 - -0.0
70,007 + -0.0
70,017 - -0.0
71,562 + +0.3
71,564 + -1.0
71,564 + -1.1

Or see this region's nucleotide sequence