Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00690 and PGA1_c00700 are separated by 205 nucleotides PGA1_c00700 and PGA1_c00710 are separated by 27 nucleotides PGA1_c00710 and PGA1_c00720 are separated by 57 nucleotides PGA1_c00720 and PGA1_c00730 are separated by 86 nucleotides PGA1_c00730 and PGA1_c00740 are separated by 4 nucleotides
PGA1_c00690: PGA1_c00690 - putative integral membrane protein, at 68,980 to 69,873
_c00690
PGA1_c00700: PGA1_c00700 - ATP synthase protein I, at 70,079 to 70,414
_c00700
PGA1_c00710: PGA1_c00710 - ATP synthase a chain, at 70,442 to 71,245
_c00710
PGA1_c00720: PGA1_c00720 - ATP synthase C chain, at 71,303 to 71,527
_c00720
PGA1_c00730: PGA1_c00730 - ATP synthase B' chain, at 71,614 to 72,159
_c00730
PGA1_c00740: PGA1_c00740 - ATP synthase B chain, at 72,164 to 72,724
_c00740
Position (kb)
70
71
72 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 69.457 kb on + strand, within PGA1_c00690 at 69.457 kb on + strand, within PGA1_c00690 at 69.457 kb on + strand, within PGA1_c00690 at 69.457 kb on + strand, within PGA1_c00690 at 69.462 kb on + strand, within PGA1_c00690 at 69.465 kb on - strand, within PGA1_c00690 at 69.465 kb on - strand, within PGA1_c00690 at 69.545 kb on - strand, within PGA1_c00690 at 69.592 kb on + strand, within PGA1_c00690 at 69.609 kb on + strand, within PGA1_c00690 at 69.609 kb on + strand, within PGA1_c00690 at 69.617 kb on - strand, within PGA1_c00690 at 69.617 kb on - strand, within PGA1_c00690 at 69.619 kb on - strand, within PGA1_c00690 at 69.653 kb on - strand, within PGA1_c00690 at 69.664 kb on - strand, within PGA1_c00690 at 69.666 kb on + strand, within PGA1_c00690 at 69.671 kb on + strand, within PGA1_c00690 at 69.681 kb on + strand, within PGA1_c00690 at 69.681 kb on + strand, within PGA1_c00690 at 69.682 kb on - strand, within PGA1_c00690 at 69.686 kb on + strand, within PGA1_c00690 at 69.689 kb on - strand, within PGA1_c00690 at 69.694 kb on - strand, within PGA1_c00690 at 69.694 kb on - strand, within PGA1_c00690 at 69.699 kb on - strand, within PGA1_c00690 at 69.758 kb on - strand, within PGA1_c00690 at 69.758 kb on - strand, within PGA1_c00690 at 69.799 kb on + strand at 69.800 kb on + strand at 69.802 kb on - strand at 69.807 kb on - strand at 69.808 kb on - strand at 69.810 kb on + strand at 69.815 kb on + strand at 69.815 kb on + strand at 69.815 kb on + strand at 69.818 kb on - strand at 69.827 kb on - strand at 69.860 kb on + strand at 69.891 kb on - strand at 70.007 kb on + strand at 70.017 kb on - strand at 71.562 kb on + strand at 71.564 kb on + strand at 71.564 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 69,457 + PGA1_c00690 0.53 +1.0 69,457 + PGA1_c00690 0.53 +2.6 69,457 + PGA1_c00690 0.53 -0.2 69,457 + PGA1_c00690 0.53 -0.2 69,462 + PGA1_c00690 0.54 -0.2 69,465 - PGA1_c00690 0.54 -2.5 69,465 - PGA1_c00690 0.54 +0.2 69,545 - PGA1_c00690 0.63 +0.3 69,592 + PGA1_c00690 0.68 -1.0 69,609 + PGA1_c00690 0.70 +0.2 69,609 + PGA1_c00690 0.70 -1.6 69,617 - PGA1_c00690 0.71 -0.4 69,617 - PGA1_c00690 0.71 -1.4 69,619 - PGA1_c00690 0.71 -1.2 69,653 - PGA1_c00690 0.75 -1.0 69,664 - PGA1_c00690 0.77 -0.6 69,666 + PGA1_c00690 0.77 +1.6 69,671 + PGA1_c00690 0.77 +2.0 69,681 + PGA1_c00690 0.78 -0.1 69,681 + PGA1_c00690 0.78 -0.4 69,682 - PGA1_c00690 0.79 +0.2 69,686 + PGA1_c00690 0.79 +0.1 69,689 - PGA1_c00690 0.79 +0.9 69,694 - PGA1_c00690 0.80 +1.0 69,694 - PGA1_c00690 0.80 -2.5 69,699 - PGA1_c00690 0.80 +0.2 69,758 - PGA1_c00690 0.87 -0.6 69,758 - PGA1_c00690 0.87 +0.8 69,799 + +1.3 69,800 + +0.2 69,802 - -0.5 69,807 - -0.6 69,808 - +0.2 69,810 + +0.7 69,815 + -1.0 69,815 + -1.4 69,815 + +0.8 69,818 - +0.5 69,827 - -0.2 69,860 + -1.0 69,891 - -0.0 70,007 + -0.0 70,017 - -0.0 71,562 + +0.3 71,564 + -1.0 71,564 + -1.1
Or see this region's nucleotide sequence