Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06710

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06690 and PGA1_c06700 are separated by 224 nucleotidesPGA1_c06700 and PGA1_c06710 are separated by 143 nucleotidesPGA1_c06710 and PGA1_c06720 are separated by 322 nucleotides PGA1_c06690: PGA1_c06690 - prephenate deydrogenase-like protein, at 686,417 to 687,202 _c06690 PGA1_c06700: PGA1_c06700 - Integral membrane protein, at 687,427 to 687,912 _c06700 PGA1_c06710: PGA1_c06710 - cytochrome c oxidase subunit 1-beta, at 688,056 to 689,729 _c06710 PGA1_c06720: PGA1_c06720 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 690,052 to 690,477 _c06720 Position (kb) 688 689 690Strain fitness (log2 ratio) -2 -1 0 1 2at 687.120 kb on + strand, within PGA1_c06690at 687.127 kb on + strandat 687.169 kb on + strandat 687.177 kb on - strandat 687.177 kb on - strandat 687.177 kb on - strandat 687.182 kb on + strandat 687.192 kb on + strandat 687.192 kb on + strandat 687.217 kb on + strandat 687.257 kb on + strandat 687.265 kb on - strandat 687.288 kb on + strandat 687.325 kb on - strandat 687.325 kb on - strandat 687.364 kb on + strandat 687.372 kb on - strandat 687.372 kb on - strandat 687.392 kb on + strandat 687.426 kb on + strandat 687.480 kb on - strand, within PGA1_c06700at 687.518 kb on + strand, within PGA1_c06700at 687.526 kb on - strand, within PGA1_c06700at 687.528 kb on + strand, within PGA1_c06700at 687.528 kb on + strand, within PGA1_c06700at 687.528 kb on + strand, within PGA1_c06700at 687.536 kb on - strand, within PGA1_c06700at 687.536 kb on - strand, within PGA1_c06700at 687.609 kb on - strand, within PGA1_c06700at 687.609 kb on - strand, within PGA1_c06700at 687.651 kb on + strand, within PGA1_c06700at 687.651 kb on + strand, within PGA1_c06700at 687.651 kb on + strand, within PGA1_c06700at 687.659 kb on - strand, within PGA1_c06700at 687.659 kb on - strand, within PGA1_c06700at 687.739 kb on + strand, within PGA1_c06700at 687.747 kb on - strand, within PGA1_c06700at 687.757 kb on - strand, within PGA1_c06700at 687.764 kb on + strand, within PGA1_c06700at 687.764 kb on - strand, within PGA1_c06700at 687.829 kb on + strand, within PGA1_c06700at 687.829 kb on + strand, within PGA1_c06700at 687.829 kb on + strand, within PGA1_c06700at 687.863 kb on - strand, within PGA1_c06700at 687.878 kb on + strandat 687.878 kb on + strandat 687.926 kb on + strandat 687.942 kb on + strandat 687.950 kb on + strandat 687.950 kb on + strandat 687.950 kb on - strandat 687.950 kb on - strandat 687.955 kb on - strandat 688.082 kb on - strandat 688.699 kb on + strand, within PGA1_c06710at 689.045 kb on + strand, within PGA1_c06710at 689.262 kb on - strand, within PGA1_c06710at 689.873 kb on + strandat 689.892 kb on + strandat 689.900 kb on - strandat 690.033 kb on + strandat 690.041 kb on - strandat 690.041 kb on - strandat 690.110 kb on - strand, within PGA1_c06720at 690.118 kb on + strand, within PGA1_c06720at 690.118 kb on + strand, within PGA1_c06720at 690.126 kb on - strand, within PGA1_c06720at 690.126 kb on - strand, within PGA1_c06720at 690.126 kb on - strand, within PGA1_c06720at 690.126 kb on - strand, within PGA1_c06720at 690.133 kb on - strand, within PGA1_c06720at 690.136 kb on + strand, within PGA1_c06720at 690.138 kb on - strand, within PGA1_c06720at 690.144 kb on - strand, within PGA1_c06720at 690.173 kb on + strand, within PGA1_c06720at 690.173 kb on + strand, within PGA1_c06720at 690.173 kb on + strand, within PGA1_c06720at 690.226 kb on + strand, within PGA1_c06720at 690.252 kb on - strand, within PGA1_c06720at 690.264 kb on - strand, within PGA1_c06720at 690.272 kb on + strand, within PGA1_c06720at 690.300 kb on + strand, within PGA1_c06720at 690.327 kb on + strand, within PGA1_c06720at 690.327 kb on + strand, within PGA1_c06720at 690.335 kb on - strand, within PGA1_c06720at 690.335 kb on - strand, within PGA1_c06720at 690.464 kb on - strandat 690.476 kb on + strandat 690.493 kb on + strandat 690.493 kb on + strandat 690.602 kb on - strandat 690.655 kb on + strandat 690.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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687,120 + PGA1_c06690 0.89 +0.3
687,127 + -1.1
687,169 + -0.1
687,177 - +0.4
687,177 - -0.7
687,177 - +0.0
687,182 + -0.2
687,192 + +0.4
687,192 + +0.7
687,217 + +0.2
687,257 + +0.2
687,265 - +1.5
687,288 + +0.2
687,325 - -0.7
687,325 - -0.8
687,364 + +1.5
687,372 - +0.4
687,372 - -1.1
687,392 + -0.7
687,426 + +0.5
687,480 - PGA1_c06700 0.11 +1.3
687,518 + PGA1_c06700 0.19 -1.8
687,526 - PGA1_c06700 0.20 +0.5
687,528 + PGA1_c06700 0.21 +2.4
687,528 + PGA1_c06700 0.21 +1.4
687,528 + PGA1_c06700 0.21 -2.1
687,536 - PGA1_c06700 0.22 +0.8
687,536 - PGA1_c06700 0.22 -1.5
687,609 - PGA1_c06700 0.37 -0.8
687,609 - PGA1_c06700 0.37 +1.5
687,651 + PGA1_c06700 0.46 -0.7
687,651 + PGA1_c06700 0.46 -0.2
687,651 + PGA1_c06700 0.46 -1.1
687,659 - PGA1_c06700 0.48 -0.5
687,659 - PGA1_c06700 0.48 -1.3
687,739 + PGA1_c06700 0.64 -0.6
687,747 - PGA1_c06700 0.66 +0.4
687,757 - PGA1_c06700 0.68 -0.6
687,764 + PGA1_c06700 0.69 +0.0
687,764 - PGA1_c06700 0.69 -0.2
687,829 + PGA1_c06700 0.83 +0.7
687,829 + PGA1_c06700 0.83 +0.2
687,829 + PGA1_c06700 0.83 -1.8
687,863 - PGA1_c06700 0.90 -0.8
687,878 + +0.3
687,878 + +0.7
687,926 + +0.5
687,942 + +0.2
687,950 + +0.5
687,950 + -1.6
687,950 - +0.1
687,950 - +1.9
687,955 - +0.5
688,082 - -1.3
688,699 + PGA1_c06710 0.38 +1.5
689,045 + PGA1_c06710 0.59 +1.5
689,262 - PGA1_c06710 0.72 +2.1
689,873 + -1.1
689,892 + +0.7
689,900 - -1.6
690,033 + -1.4
690,041 - +0.5
690,041 - +1.2
690,110 - PGA1_c06720 0.14 -0.1
690,118 + PGA1_c06720 0.15 +0.9
690,118 + PGA1_c06720 0.15 +0.5
690,126 - PGA1_c06720 0.17 -0.2
690,126 - PGA1_c06720 0.17 -1.3
690,126 - PGA1_c06720 0.17 +1.1
690,126 - PGA1_c06720 0.17 -1.5
690,133 - PGA1_c06720 0.19 +0.9
690,136 + PGA1_c06720 0.20 +0.5
690,138 - PGA1_c06720 0.20 +1.1
690,144 - PGA1_c06720 0.22 +1.2
690,173 + PGA1_c06720 0.28 +0.5
690,173 + PGA1_c06720 0.28 +0.7
690,173 + PGA1_c06720 0.28 +0.3
690,226 + PGA1_c06720 0.41 -0.6
690,252 - PGA1_c06720 0.47 +0.8
690,264 - PGA1_c06720 0.50 -1.1
690,272 + PGA1_c06720 0.52 -0.2
690,300 + PGA1_c06720 0.58 -0.5
690,327 + PGA1_c06720 0.65 +0.5
690,327 + PGA1_c06720 0.65 -0.5
690,335 - PGA1_c06720 0.66 +0.2
690,335 - PGA1_c06720 0.66 -0.2
690,464 - +0.9
690,476 + -0.2
690,493 + +0.6
690,493 + +1.5
690,602 - +0.4
690,655 + -0.1
690,663 - -0.1

Or see this region's nucleotide sequence