Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06460 and PGA1_c06470 are separated by 258 nucleotides PGA1_c06470 and PGA1_c06480 are separated by 33 nucleotides PGA1_c06480 and PGA1_c06490 are separated by 121 nucleotides
PGA1_c06460: PGA1_c06460 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 660,230 to 662,008
_c06460
PGA1_c06470: PGA1_c06470 - glycyl-tRNA synthetase alpha subunit, at 662,267 to 663,196
_c06470
PGA1_c06480: PGA1_c06480 - hypothetical protein, at 663,230 to 663,763
_c06480
PGA1_c06490: PGA1_c06490 - sodium/glutamate symport carrier protein GltS, at 663,885 to 665,093
_c06490
Position (kb)
662
663
664 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 661.308 kb on + strand, within PGA1_c06460 at 661.336 kb on - strand, within PGA1_c06460 at 661.349 kb on + strand, within PGA1_c06460 at 661.357 kb on - strand, within PGA1_c06460 at 661.361 kb on + strand, within PGA1_c06460 at 661.362 kb on - strand, within PGA1_c06460 at 661.411 kb on - strand, within PGA1_c06460 at 661.492 kb on - strand, within PGA1_c06460 at 661.492 kb on - strand, within PGA1_c06460 at 661.562 kb on + strand, within PGA1_c06460 at 661.661 kb on + strand, within PGA1_c06460 at 661.865 kb on + strand at 661.873 kb on - strand at 661.965 kb on + strand at 662.019 kb on + strand at 662.027 kb on - strand at 662.037 kb on - strand at 662.073 kb on + strand at 662.086 kb on - strand at 662.132 kb on + strand at 662.164 kb on + strand at 662.172 kb on - strand at 662.172 kb on - strand at 662.172 kb on - strand at 662.172 kb on - strand at 662.172 kb on - strand at 662.180 kb on + strand at 662.192 kb on + strand at 662.200 kb on + strand at 662.200 kb on - strand at 663.191 kb on + strand at 663.227 kb on + strand at 663.302 kb on - strand, within PGA1_c06480 at 663.698 kb on + strand, within PGA1_c06480 at 663.698 kb on + strand, within PGA1_c06480 at 663.729 kb on + strand at 663.757 kb on - strand at 663.771 kb on + strand at 663.801 kb on - strand at 663.834 kb on - strand at 663.861 kb on + strand at 663.861 kb on + strand at 663.861 kb on + strand at 663.861 kb on + strand at 663.869 kb on - strand at 663.896 kb on + strand at 663.896 kb on + strand at 663.904 kb on - strand at 663.904 kb on - strand at 663.904 kb on - strand at 663.904 kb on - strand at 663.904 kb on - strand at 663.966 kb on - strand at 663.978 kb on + strand at 663.978 kb on + strand at 664.046 kb on + strand, within PGA1_c06490 at 664.054 kb on + strand, within PGA1_c06490 at 664.062 kb on - strand, within PGA1_c06490
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 661,308 + PGA1_c06460 0.61 -0.4 661,336 - PGA1_c06460 0.62 -1.1 661,349 + PGA1_c06460 0.63 -1.6 661,357 - PGA1_c06460 0.63 -0.3 661,361 + PGA1_c06460 0.64 +0.3 661,362 - PGA1_c06460 0.64 -1.0 661,411 - PGA1_c06460 0.66 -1.1 661,492 - PGA1_c06460 0.71 -0.5 661,492 - PGA1_c06460 0.71 +0.3 661,562 + PGA1_c06460 0.75 +0.3 661,661 + PGA1_c06460 0.80 +0.5 661,865 + -0.6 661,873 - -0.3 661,965 + -0.9 662,019 + -0.8 662,027 - +0.7 662,037 - +0.5 662,073 + -0.1 662,086 - +0.1 662,132 + +0.5 662,164 + -0.1 662,172 - -0.2 662,172 - +2.0 662,172 - -1.5 662,172 - +1.3 662,172 - -0.8 662,180 + -0.1 662,192 + -1.3 662,200 + -0.3 662,200 - +1.5 663,191 + -0.5 663,227 + -0.3 663,302 - PGA1_c06480 0.13 +0.5 663,698 + PGA1_c06480 0.88 -1.2 663,698 + PGA1_c06480 0.88 -1.1 663,729 + -0.1 663,757 - +0.3 663,771 + +0.2 663,801 - +0.5 663,834 - +0.0 663,861 + -2.2 663,861 + -0.2 663,861 + -1.9 663,861 + +0.6 663,869 - -1.3 663,896 + -0.5 663,896 + +0.2 663,904 - -0.6 663,904 - -0.1 663,904 - -1.3 663,904 - +0.4 663,904 - +0.5 663,966 - -0.1 663,978 + -1.1 663,978 + -0.2 664,046 + PGA1_c06490 0.13 -1.0 664,054 + PGA1_c06490 0.14 -0.6 664,062 - PGA1_c06490 0.15 +0.2
Or see this region's nucleotide sequence