Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06470

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06460 and PGA1_c06470 are separated by 258 nucleotidesPGA1_c06470 and PGA1_c06480 are separated by 33 nucleotidesPGA1_c06480 and PGA1_c06490 are separated by 121 nucleotides PGA1_c06460: PGA1_c06460 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 660,230 to 662,008 _c06460 PGA1_c06470: PGA1_c06470 - glycyl-tRNA synthetase alpha subunit, at 662,267 to 663,196 _c06470 PGA1_c06480: PGA1_c06480 - hypothetical protein, at 663,230 to 663,763 _c06480 PGA1_c06490: PGA1_c06490 - sodium/glutamate symport carrier protein GltS, at 663,885 to 665,093 _c06490 Position (kb) 662 663 664Strain fitness (log2 ratio) -2 -1 0 1 2at 661.308 kb on + strand, within PGA1_c06460at 661.336 kb on - strand, within PGA1_c06460at 661.349 kb on + strand, within PGA1_c06460at 661.357 kb on - strand, within PGA1_c06460at 661.361 kb on + strand, within PGA1_c06460at 661.362 kb on - strand, within PGA1_c06460at 661.411 kb on - strand, within PGA1_c06460at 661.492 kb on - strand, within PGA1_c06460at 661.492 kb on - strand, within PGA1_c06460at 661.562 kb on + strand, within PGA1_c06460at 661.661 kb on + strand, within PGA1_c06460at 661.865 kb on + strandat 661.873 kb on - strandat 661.965 kb on + strandat 662.019 kb on + strandat 662.027 kb on - strandat 662.037 kb on - strandat 662.073 kb on + strandat 662.086 kb on - strandat 662.132 kb on + strandat 662.164 kb on + strandat 662.172 kb on - strandat 662.172 kb on - strandat 662.172 kb on - strandat 662.172 kb on - strandat 662.172 kb on - strandat 662.180 kb on + strandat 662.192 kb on + strandat 662.200 kb on + strandat 662.200 kb on - strandat 663.191 kb on + strandat 663.227 kb on + strandat 663.302 kb on - strand, within PGA1_c06480at 663.698 kb on + strand, within PGA1_c06480at 663.698 kb on + strand, within PGA1_c06480at 663.729 kb on + strandat 663.757 kb on - strandat 663.771 kb on + strandat 663.801 kb on - strandat 663.834 kb on - strandat 663.861 kb on + strandat 663.861 kb on + strandat 663.861 kb on + strandat 663.861 kb on + strandat 663.869 kb on - strandat 663.896 kb on + strandat 663.896 kb on + strandat 663.904 kb on - strandat 663.904 kb on - strandat 663.904 kb on - strandat 663.904 kb on - strandat 663.904 kb on - strandat 663.966 kb on - strandat 663.978 kb on + strandat 663.978 kb on + strandat 664.046 kb on + strand, within PGA1_c06490at 664.054 kb on + strand, within PGA1_c06490at 664.062 kb on - strand, within PGA1_c06490

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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661,308 + PGA1_c06460 0.61 -0.4
661,336 - PGA1_c06460 0.62 -1.1
661,349 + PGA1_c06460 0.63 -1.6
661,357 - PGA1_c06460 0.63 -0.3
661,361 + PGA1_c06460 0.64 +0.3
661,362 - PGA1_c06460 0.64 -1.0
661,411 - PGA1_c06460 0.66 -1.1
661,492 - PGA1_c06460 0.71 -0.5
661,492 - PGA1_c06460 0.71 +0.3
661,562 + PGA1_c06460 0.75 +0.3
661,661 + PGA1_c06460 0.80 +0.5
661,865 + -0.6
661,873 - -0.3
661,965 + -0.9
662,019 + -0.8
662,027 - +0.7
662,037 - +0.5
662,073 + -0.1
662,086 - +0.1
662,132 + +0.5
662,164 + -0.1
662,172 - -0.2
662,172 - +2.0
662,172 - -1.5
662,172 - +1.3
662,172 - -0.8
662,180 + -0.1
662,192 + -1.3
662,200 + -0.3
662,200 - +1.5
663,191 + -0.5
663,227 + -0.3
663,302 - PGA1_c06480 0.13 +0.5
663,698 + PGA1_c06480 0.88 -1.2
663,698 + PGA1_c06480 0.88 -1.1
663,729 + -0.1
663,757 - +0.3
663,771 + +0.2
663,801 - +0.5
663,834 - +0.0
663,861 + -2.2
663,861 + -0.2
663,861 + -1.9
663,861 + +0.6
663,869 - -1.3
663,896 + -0.5
663,896 + +0.2
663,904 - -0.6
663,904 - -0.1
663,904 - -1.3
663,904 - +0.4
663,904 - +0.5
663,966 - -0.1
663,978 + -1.1
663,978 + -0.2
664,046 + PGA1_c06490 0.13 -1.0
664,054 + PGA1_c06490 0.14 -0.6
664,062 - PGA1_c06490 0.15 +0.2

Or see this region's nucleotide sequence