Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06290

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06260 and PGA1_c06270 are separated by 1 nucleotidesPGA1_c06270 and PGA1_c06280 overlap by 1 nucleotidesPGA1_c06280 and PGA1_c06290 are separated by 24 nucleotidesPGA1_c06290 and PGA1_c06300 are separated by 118 nucleotidesPGA1_c06300 and PGA1_c06310 are separated by 4 nucleotides PGA1_c06260: PGA1_c06260 - protoheme IX farnesyltransferase CtaB, at 642,029 to 642,970 _c06260 PGA1_c06270: PGA1_c06270 - hypothetical protein, at 642,972 to 643,151 _c06270 PGA1_c06280: PGA1_c06280 - cytochrome c oxidase assembly protein CtaG, at 643,151 to 643,738 _c06280 PGA1_c06290: PGA1_c06290 - cytochrome c oxidase subunit 3, at 643,763 to 644,578 _c06290 PGA1_c06300: PGA1_c06300 - Uncharacterized conserved protein, at 644,697 to 645,371 _c06300 PGA1_c06310: PGA1_c06310 - threonine synthase ThrC, at 645,376 to 646,764 _c06310 Position (kb) 643 644 645Strain fitness (log2 ratio) -2 -1 0 1at 643.133 kb on + strand, within PGA1_c06270at 643.140 kb on + strandat 643.352 kb on - strand, within PGA1_c06280at 643.648 kb on + strand, within PGA1_c06280at 643.656 kb on - strand, within PGA1_c06280at 643.994 kb on + strand, within PGA1_c06290at 644.002 kb on - strand, within PGA1_c06290at 644.593 kb on - strandat 644.598 kb on + strandat 644.605 kb on + strandat 644.606 kb on - strandat 644.655 kb on + strandat 644.655 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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643,133 + PGA1_c06270 0.89 +0.5
643,140 + +0.7
643,352 - PGA1_c06280 0.34 -1.8
643,648 + PGA1_c06280 0.85 +1.5
643,656 - PGA1_c06280 0.86 -0.1
643,994 + PGA1_c06290 0.28 +1.5
644,002 - PGA1_c06290 0.29 +0.9
644,593 - -0.2
644,598 + -2.6
644,605 + +0.5
644,606 - -1.5
644,655 + +1.7
644,655 + -0.3

Or see this region's nucleotide sequence