Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04630 and PGA1_c04640 are separated by 54 nucleotides PGA1_c04640 and PGA1_c04650 are separated by 6 nucleotides PGA1_c04650 and PGA1_c04660 are separated by 47 nucleotides PGA1_c04660 and PGA1_c04670 are separated by 235 nucleotides
PGA1_c04630: PGA1_c04630 - 2-nitropropane dioxygenase, at 455,807 to 456,901
_c04630
PGA1_c04640: PGA1_c04640 - enoyl-[acyl-carrier-protein] reductase FabI, at 456,956 to 457,747
_c04640
PGA1_c04650: PGA1_c04650 - 3-oxoacyl-[acyl-carrier-protein] synthase FabB, at 457,754 to 458,983
_c04650
PGA1_c04660: PGA1_c04660 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase FabA, at 459,031 to 459,540
_c04660
PGA1_c04670: PGA1_c04670 - putative metal ion uptake regulator, at 459,776 to 460,192
_c04670
Position (kb) 457
458
459 Strain fitness (log2 ratio) -2
-1
0
1 at 456.797 kb on + strand at 456.797 kb on + strand at 456.800 kb on - strand at 456.805 kb on - strand at 456.805 kb on - strand at 456.831 kb on + strand at 459.024 kb on - strand at 459.024 kb on - strand at 459.058 kb on - strand at 459.615 kb on + strand at 459.615 kb on - strand at 459.623 kb on - strand at 459.624 kb on - strand at 459.648 kb on + strand at 459.654 kb on + strand at 459.671 kb on + strand at 459.687 kb on - strand at 459.728 kb on - strand at 459.736 kb on - strand at 459.760 kb on + strand at 459.760 kb on + strand at 459.763 kb on - strand at 459.768 kb on - strand at 459.768 kb on - strand at 459.768 kb on - strand at 459.768 kb on - strand at 459.781 kb on + strand at 459.786 kb on + strand at 459.839 kb on + strand, within PGA1_c04670 at 459.846 kb on + strand, within PGA1_c04670 at 459.847 kb on - strand, within PGA1_c04670 at 459.925 kb on + strand, within PGA1_c04670 at 459.925 kb on + strand, within PGA1_c04670 at 459.925 kb on + strand, within PGA1_c04670 at 459.933 kb on - strand, within PGA1_c04670 at 459.934 kb on - strand, within PGA1_c04670
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 456,797 + +0.5 456,797 + -0.1 456,800 - -2.5 456,805 - +0.5 456,805 - -0.3 456,831 + -0.4 459,024 - -0.5 459,024 - +0.3 459,058 - -2.0 459,615 + -0.3 459,615 - -1.0 459,623 - +1.5 459,624 - -0.5 459,648 + +0.3 459,654 + -0.7 459,671 + -2.2 459,687 - -1.6 459,728 - -1.5 459,736 - +1.5 459,760 + +1.1 459,760 + +0.8 459,763 - -0.0 459,768 - -0.8 459,768 - -0.5 459,768 - +0.3 459,768 - -0.7 459,781 + -0.9 459,786 + -0.0 459,839 + PGA1_c04670 0.15 -0.0 459,846 + PGA1_c04670 0.17 -0.5 459,847 - PGA1_c04670 0.17 -1.5 459,925 + PGA1_c04670 0.36 -0.0 459,925 + PGA1_c04670 0.36 -1.9 459,925 + PGA1_c04670 0.36 -0.0 459,933 - PGA1_c04670 0.38 -2.4 459,934 - PGA1_c04670 0.38 -2.5
Or see this region's nucleotide sequence