Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00020

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00010 and PGA1_65p00020 are separated by 249 nucleotidesPGA1_65p00020 and PGA1_65p00030 overlap by 4 nucleotides PGA1_65p00010: PGA1_65p00010 - replication initiation protein, at 101 to 1,126 _65p00010 PGA1_65p00020: PGA1_65p00020 - putative type I secretion membrane fusion protein, at 1,376 to 2,779 _65p00020 PGA1_65p00030: PGA1_65p00030 - putative type I secretion system ATPase, at 2,776 to 4,539 _65p00030 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 1.116 kb on + strandat 1.121 kb on + strandat 1.126 kb on + strandat 1.301 kb on - strandat 1.398 kb on - strandat 1.420 kb on - strandat 1.425 kb on - strandat 1.558 kb on - strand, within PGA1_65p00020at 1.621 kb on + strand, within PGA1_65p00020at 1.785 kb on - strand, within PGA1_65p00020at 1.987 kb on + strand, within PGA1_65p00020at 1.989 kb on - strand, within PGA1_65p00020at 2.669 kb on - strandat 2.683 kb on + strandat 2.683 kb on + strandat 2.774 kb on + strandat 2.856 kb on + strandat 2.875 kb on - strandat 3.023 kb on - strand, within PGA1_65p00030at 3.153 kb on - strand, within PGA1_65p00030at 3.255 kb on + strand, within PGA1_65p00030at 3.307 kb on + strand, within PGA1_65p00030at 3.433 kb on - strand, within PGA1_65p00030at 3.461 kb on + strand, within PGA1_65p00030at 3.512 kb on + strand, within PGA1_65p00030at 3.545 kb on + strand, within PGA1_65p00030

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,116 + -1.3
1,121 + -0.7
1,126 + -1.4
1,301 - -1.1
1,398 - -0.4
1,420 - -0.7
1,425 - -0.7
1,558 - PGA1_65p00020 0.13 +1.5
1,621 + PGA1_65p00020 0.17 -0.3
1,785 - PGA1_65p00020 0.29 -2.3
1,987 + PGA1_65p00020 0.44 +0.3
1,989 - PGA1_65p00020 0.44 -0.1
2,669 - -1.4
2,683 + +0.4
2,683 + +0.6
2,774 + -0.1
2,856 + -1.7
2,875 - +0.2
3,023 - PGA1_65p00030 0.14 +0.3
3,153 - PGA1_65p00030 0.21 -1.3
3,255 + PGA1_65p00030 0.27 +1.5
3,307 + PGA1_65p00030 0.30 +0.1
3,433 - PGA1_65p00030 0.37 +0.9
3,461 + PGA1_65p00030 0.39 +0.5
3,512 + PGA1_65p00030 0.42 +0.6
3,545 + PGA1_65p00030 0.44 -0.3

Or see this region's nucleotide sequence