Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00440

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00430 and PGA1_78p00440 overlap by 4 nucleotidesPGA1_78p00440 and PGA1_78p00450 overlap by 4 nucleotidesPGA1_78p00450 and PGA1_78p00460 are separated by 53 nucleotides PGA1_78p00430: PGA1_78p00430 - putative AMP-dependent synthetase and ligase, at 53,372 to 54,676 _78p00430 PGA1_78p00440: PGA1_78p00440 - hypothetical protein, at 54,673 to 55,995 _78p00440 PGA1_78p00450: PGA1_78p00450 - Sugar phosphate isomerases/epimerases, at 55,992 to 56,858 _78p00450 PGA1_78p00460: PGA1_78p00460 - ABC transporter, transmembrane ATP-binding protein, at 56,912 to 58,807 _78p00460 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 53.759 kb on - strandat 53.887 kb on - strand, within PGA1_78p00430at 53.920 kb on - strand, within PGA1_78p00430at 55.066 kb on - strand, within PGA1_78p00440at 55.104 kb on - strand, within PGA1_78p00440at 55.205 kb on - strand, within PGA1_78p00440at 55.707 kb on + strand, within PGA1_78p00440at 55.969 kb on + strandat 56.262 kb on - strand, within PGA1_78p00450

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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53,759 - +0.8
53,887 - PGA1_78p00430 0.39 -1.8
53,920 - PGA1_78p00430 0.42 -0.5
55,066 - PGA1_78p00440 0.30 -1.2
55,104 - PGA1_78p00440 0.33 -1.5
55,205 - PGA1_78p00440 0.40 -0.8
55,707 + PGA1_78p00440 0.78 +0.0
55,969 + +1.4
56,262 - PGA1_78p00450 0.31 -0.4

Or see this region's nucleotide sequence