Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00390

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00370 and PGA1_78p00380 are separated by 10 nucleotidesPGA1_78p00380 and PGA1_78p00390 overlap by 8 nucleotidesPGA1_78p00390 and PGA1_78p00400 are separated by 269 nucleotides PGA1_78p00370: PGA1_78p00370 - ABC transporter, permease protein, at 44,208 to 45,191 _78p00370 PGA1_78p00380: PGA1_78p00380 - ABC transporter, permease protein, at 45,202 to 46,197 _78p00380 PGA1_78p00390: PGA1_78p00390 - periplasmic binding protein, at 46,190 to 47,173 _78p00390 PGA1_78p00400: PGA1_78p00400 - tonB dependent receptor, at 47,443 to 49,437 _78p00400 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 45.213 kb on - strandat 45.692 kb on - strand, within PGA1_78p00380at 45.733 kb on - strand, within PGA1_78p00380at 45.835 kb on - strand, within PGA1_78p00380at 46.075 kb on + strand, within PGA1_78p00380at 46.288 kb on - strandat 46.684 kb on - strand, within PGA1_78p00390at 47.046 kb on - strand, within PGA1_78p00390at 47.719 kb on - strand, within PGA1_78p00400

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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45,213 - -0.8
45,692 - PGA1_78p00380 0.49 +0.2
45,733 - PGA1_78p00380 0.53 +0.8
45,835 - PGA1_78p00380 0.64 -2.2
46,075 + PGA1_78p00380 0.88 +0.0
46,288 - -2.0
46,684 - PGA1_78p00390 0.50 -0.2
47,046 - PGA1_78p00390 0.87 -1.0
47,719 - PGA1_78p00400 0.14 -1.2

Or see this region's nucleotide sequence