Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00850 and PGA1_262p00860 are separated by 297 nucleotides PGA1_262p00860 and PGA1_262p00870 are separated by 42 nucleotides PGA1_262p00870 and PGA1_262p00880 are separated by 4 nucleotides
PGA1_262p00850: PGA1_262p00850 - putative sodium dependent symporter, at 94,642 to 96,099
_262p00850
PGA1_262p00860: PGA1_262p00860 - Uncharacterized conserved protein, at 96,397 to 96,855
_262p00860
PGA1_262p00870: PGA1_262p00870 - ABC transporter, extracellular solute-binding protein, at 96,898 to 98,499
_262p00870
PGA1_262p00880: PGA1_262p00880 - ABC transporter, integral inner membrane component, at 98,504 to 99,547
_262p00880
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.375 kb on + strand at 97.228 kb on + strand, within PGA1_262p00870 at 97.296 kb on + strand, within PGA1_262p00870 at 97.304 kb on - strand, within PGA1_262p00870 at 97.404 kb on - strand, within PGA1_262p00870 at 97.458 kb on - strand, within PGA1_262p00870 at 97.605 kb on + strand, within PGA1_262p00870 at 97.803 kb on - strand, within PGA1_262p00870 at 97.807 kb on + strand, within PGA1_262p00870 at 97.807 kb on + strand, within PGA1_262p00870 at 97.880 kb on - strand, within PGA1_262p00870 at 98.142 kb on + strand, within PGA1_262p00870 at 98.189 kb on - strand, within PGA1_262p00870 at 98.276 kb on - strand, within PGA1_262p00870 at 98.790 kb on + strand, within PGA1_262p00880 at 98.793 kb on - strand, within PGA1_262p00880 at 98.873 kb on + strand, within PGA1_262p00880 at 98.999 kb on - strand, within PGA1_262p00880 at 99.166 kb on + strand, within PGA1_262p00880 at 99.222 kb on + strand, within PGA1_262p00880 at 99.223 kb on + strand, within PGA1_262p00880 at 99.356 kb on + strand, within PGA1_262p00880 at 99.356 kb on + strand, within PGA1_262p00880 at 99.364 kb on - strand, within PGA1_262p00880 at 99.369 kb on - strand, within PGA1_262p00880
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 96,375 + +0.5 97,228 + PGA1_262p00870 0.21 +1.2 97,296 + PGA1_262p00870 0.25 +0.0 97,304 - PGA1_262p00870 0.25 +1.4 97,404 - PGA1_262p00870 0.32 +1.7 97,458 - PGA1_262p00870 0.35 +0.8 97,605 + PGA1_262p00870 0.44 -0.2 97,803 - PGA1_262p00870 0.56 +1.6 97,807 + PGA1_262p00870 0.57 -0.9 97,807 + PGA1_262p00870 0.57 +0.8 97,880 - PGA1_262p00870 0.61 +0.4 98,142 + PGA1_262p00870 0.78 +0.1 98,189 - PGA1_262p00870 0.81 -0.3 98,276 - PGA1_262p00870 0.86 +2.1 98,790 + PGA1_262p00880 0.27 +0.6 98,793 - PGA1_262p00880 0.28 -0.0 98,873 + PGA1_262p00880 0.35 -0.2 98,999 - PGA1_262p00880 0.47 -2.0 99,166 + PGA1_262p00880 0.63 -0.8 99,222 + PGA1_262p00880 0.69 +1.4 99,223 + PGA1_262p00880 0.69 -0.2 99,356 + PGA1_262p00880 0.82 +1.1 99,356 + PGA1_262p00880 0.82 +0.1 99,364 - PGA1_262p00880 0.82 -0.8 99,369 - PGA1_262p00880 0.83 -0.8
Or see this region's nucleotide sequence