Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c34720 and PGA1_c34730 are separated by 14 nucleotides PGA1_c34730 and PGA1_c34740 are separated by 126 nucleotides PGA1_c34740 and PGA1_c34750 are separated by 73 nucleotides
PGA1_c34720: PGA1_c34720 - phosphoribosyl transferase-like protein, at 3,642,619 to 3,643,347
_c34720
PGA1_c34730: PGA1_c34730 - hypothetical protein, at 3,643,362 to 3,644,192
_c34730
PGA1_c34740: PGA1_c34740 - ferrochelatase HemH, at 3,644,319 to 3,645,380
_c34740
PGA1_c34750: PGA1_c34750 - putative aminotransferase class 3, at 3,645,454 to 3,648,483
_c34750
Position (kb)
3644
3645
3646 Strain fitness (log2 ratio)
-1
0
1 at 3643.364 kb on - strand at 3643.364 kb on - strand at 3644.158 kb on + strand at 3644.158 kb on + strand at 3644.166 kb on - strand at 3644.178 kb on + strand at 3644.181 kb on + strand at 3644.200 kb on - strand at 3644.208 kb on + strand at 3644.208 kb on + strand at 3644.208 kb on + strand at 3644.215 kb on + strand at 3644.216 kb on - strand at 3644.216 kb on - strand at 3644.221 kb on - strand at 3645.401 kb on - strand at 3645.456 kb on - strand at 3645.465 kb on + strand at 3645.486 kb on - strand at 3645.489 kb on - strand at 3645.496 kb on - strand at 3645.501 kb on + strand at 3645.512 kb on - strand at 3645.580 kb on - strand at 3645.587 kb on + strand at 3645.595 kb on - strand at 3645.620 kb on + strand at 3645.763 kb on + strand, within PGA1_c34750 at 3645.765 kb on - strand, within PGA1_c34750 at 3645.770 kb on - strand, within PGA1_c34750 at 3645.776 kb on + strand, within PGA1_c34750 at 3645.831 kb on - strand, within PGA1_c34750 at 3645.831 kb on - strand, within PGA1_c34750 at 3645.892 kb on + strand, within PGA1_c34750 at 3645.906 kb on + strand, within PGA1_c34750 at 3645.925 kb on + strand, within PGA1_c34750 at 3645.951 kb on + strand, within PGA1_c34750 at 3645.996 kb on - strand, within PGA1_c34750 at 3646.160 kb on + strand, within PGA1_c34750 at 3646.241 kb on - strand, within PGA1_c34750 at 3646.248 kb on - strand, within PGA1_c34750 at 3646.258 kb on - strand, within PGA1_c34750 at 3646.282 kb on - strand, within PGA1_c34750 at 3646.304 kb on - strand, within PGA1_c34750 at 3646.352 kb on + strand, within PGA1_c34750 at 3646.352 kb on + strand, within PGA1_c34750 at 3646.352 kb on + strand, within PGA1_c34750 at 3646.357 kb on + strand, within PGA1_c34750 at 3646.360 kb on - strand, within PGA1_c34750 at 3646.365 kb on + strand, within PGA1_c34750 at 3646.375 kb on - strand, within PGA1_c34750
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 3,643,364 - -0.6 3,643,364 - -1.4 3,644,158 + -0.4 3,644,158 + -0.4 3,644,166 - -0.6 3,644,178 + -0.5 3,644,181 + +0.3 3,644,200 - +0.4 3,644,208 + -0.5 3,644,208 + -0.5 3,644,208 + +0.4 3,644,215 + -1.4 3,644,216 - +0.9 3,644,216 - +0.4 3,644,221 - -0.1 3,645,401 - +0.6 3,645,456 - +1.5 3,645,465 + +0.2 3,645,486 - -1.2 3,645,489 - +0.2 3,645,496 - +0.6 3,645,501 + -0.8 3,645,512 - +1.1 3,645,580 - -1.7 3,645,587 + +0.6 3,645,595 - -1.0 3,645,620 + -0.3 3,645,763 + PGA1_c34750 0.10 -1.7 3,645,765 - PGA1_c34750 0.10 +0.7 3,645,770 - PGA1_c34750 0.10 -1.0 3,645,776 + PGA1_c34750 0.11 -0.4 3,645,831 - PGA1_c34750 0.12 +1.3 3,645,831 - PGA1_c34750 0.12 +1.2 3,645,892 + PGA1_c34750 0.14 -0.9 3,645,906 + PGA1_c34750 0.15 -0.9 3,645,925 + PGA1_c34750 0.16 -0.5 3,645,951 + PGA1_c34750 0.16 -0.4 3,645,996 - PGA1_c34750 0.18 +1.6 3,646,160 + PGA1_c34750 0.23 +0.6 3,646,241 - PGA1_c34750 0.26 +1.4 3,646,248 - PGA1_c34750 0.26 +0.5 3,646,258 - PGA1_c34750 0.27 +1.6 3,646,282 - PGA1_c34750 0.27 +0.1 3,646,304 - PGA1_c34750 0.28 -0.6 3,646,352 + PGA1_c34750 0.30 +1.6 3,646,352 + PGA1_c34750 0.30 +1.2 3,646,352 + PGA1_c34750 0.30 +0.4 3,646,357 + PGA1_c34750 0.30 -0.5 3,646,360 - PGA1_c34750 0.30 +1.4 3,646,365 + PGA1_c34750 0.30 +0.6 3,646,375 - PGA1_c34750 0.30 -1.4
Or see this region's nucleotide sequence