Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34740

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c34720 and PGA1_c34730 are separated by 14 nucleotidesPGA1_c34730 and PGA1_c34740 are separated by 126 nucleotidesPGA1_c34740 and PGA1_c34750 are separated by 73 nucleotides PGA1_c34720: PGA1_c34720 - phosphoribosyl transferase-like protein, at 3,642,619 to 3,643,347 _c34720 PGA1_c34730: PGA1_c34730 - hypothetical protein, at 3,643,362 to 3,644,192 _c34730 PGA1_c34740: PGA1_c34740 - ferrochelatase HemH, at 3,644,319 to 3,645,380 _c34740 PGA1_c34750: PGA1_c34750 - putative aminotransferase class 3, at 3,645,454 to 3,648,483 _c34750 Position (kb) 3644 3645 3646Strain fitness (log2 ratio) -1 0 1at 3643.364 kb on - strandat 3643.364 kb on - strandat 3644.158 kb on + strandat 3644.158 kb on + strandat 3644.166 kb on - strandat 3644.178 kb on + strandat 3644.181 kb on + strandat 3644.200 kb on - strandat 3644.208 kb on + strandat 3644.208 kb on + strandat 3644.208 kb on + strandat 3644.215 kb on + strandat 3644.216 kb on - strandat 3644.216 kb on - strandat 3644.221 kb on - strandat 3645.401 kb on - strandat 3645.456 kb on - strandat 3645.465 kb on + strandat 3645.486 kb on - strandat 3645.489 kb on - strandat 3645.496 kb on - strandat 3645.501 kb on + strandat 3645.512 kb on - strandat 3645.580 kb on - strandat 3645.587 kb on + strandat 3645.595 kb on - strandat 3645.620 kb on + strandat 3645.763 kb on + strand, within PGA1_c34750at 3645.765 kb on - strand, within PGA1_c34750at 3645.770 kb on - strand, within PGA1_c34750at 3645.776 kb on + strand, within PGA1_c34750at 3645.831 kb on - strand, within PGA1_c34750at 3645.831 kb on - strand, within PGA1_c34750at 3645.892 kb on + strand, within PGA1_c34750at 3645.906 kb on + strand, within PGA1_c34750at 3645.925 kb on + strand, within PGA1_c34750at 3645.951 kb on + strand, within PGA1_c34750at 3645.996 kb on - strand, within PGA1_c34750at 3646.160 kb on + strand, within PGA1_c34750at 3646.241 kb on - strand, within PGA1_c34750at 3646.248 kb on - strand, within PGA1_c34750at 3646.258 kb on - strand, within PGA1_c34750at 3646.282 kb on - strand, within PGA1_c34750at 3646.304 kb on - strand, within PGA1_c34750at 3646.352 kb on + strand, within PGA1_c34750at 3646.352 kb on + strand, within PGA1_c34750at 3646.352 kb on + strand, within PGA1_c34750at 3646.357 kb on + strand, within PGA1_c34750at 3646.360 kb on - strand, within PGA1_c34750at 3646.365 kb on + strand, within PGA1_c34750at 3646.375 kb on - strand, within PGA1_c34750

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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3,643,364 - -0.6
3,643,364 - -1.4
3,644,158 + -0.4
3,644,158 + -0.4
3,644,166 - -0.6
3,644,178 + -0.5
3,644,181 + +0.3
3,644,200 - +0.4
3,644,208 + -0.5
3,644,208 + -0.5
3,644,208 + +0.4
3,644,215 + -1.4
3,644,216 - +0.9
3,644,216 - +0.4
3,644,221 - -0.1
3,645,401 - +0.6
3,645,456 - +1.5
3,645,465 + +0.2
3,645,486 - -1.2
3,645,489 - +0.2
3,645,496 - +0.6
3,645,501 + -0.8
3,645,512 - +1.1
3,645,580 - -1.7
3,645,587 + +0.6
3,645,595 - -1.0
3,645,620 + -0.3
3,645,763 + PGA1_c34750 0.10 -1.7
3,645,765 - PGA1_c34750 0.10 +0.7
3,645,770 - PGA1_c34750 0.10 -1.0
3,645,776 + PGA1_c34750 0.11 -0.4
3,645,831 - PGA1_c34750 0.12 +1.3
3,645,831 - PGA1_c34750 0.12 +1.2
3,645,892 + PGA1_c34750 0.14 -0.9
3,645,906 + PGA1_c34750 0.15 -0.9
3,645,925 + PGA1_c34750 0.16 -0.5
3,645,951 + PGA1_c34750 0.16 -0.4
3,645,996 - PGA1_c34750 0.18 +1.6
3,646,160 + PGA1_c34750 0.23 +0.6
3,646,241 - PGA1_c34750 0.26 +1.4
3,646,248 - PGA1_c34750 0.26 +0.5
3,646,258 - PGA1_c34750 0.27 +1.6
3,646,282 - PGA1_c34750 0.27 +0.1
3,646,304 - PGA1_c34750 0.28 -0.6
3,646,352 + PGA1_c34750 0.30 +1.6
3,646,352 + PGA1_c34750 0.30 +1.2
3,646,352 + PGA1_c34750 0.30 +0.4
3,646,357 + PGA1_c34750 0.30 -0.5
3,646,360 - PGA1_c34750 0.30 +1.4
3,646,365 + PGA1_c34750 0.30 +0.6
3,646,375 - PGA1_c34750 0.30 -1.4

Or see this region's nucleotide sequence