Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32780

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32760 and PGA1_c32770 overlap by 1 nucleotidesPGA1_c32770 and PGA1_c32780 are separated by 14 nucleotidesPGA1_c32780 and PGA1_c32790 are separated by 221 nucleotides PGA1_c32760: PGA1_c32760 - manganese transport system membrane protein MntC, at 3,434,775 to 3,435,980 _c32760 PGA1_c32770: PGA1_c32770 - manganese transport system ATP-binding protein MntB, at 3,435,980 to 3,436,828 _c32770 PGA1_c32780: PGA1_c32780 - manganese-binding lipoprotein MntA, at 3,436,843 to 3,437,853 _c32780 PGA1_c32790: PGA1_c32790 - putative deoxyribose-phosphate aldolase, at 3,438,075 to 3,439,064 _c32790 Position (kb) 3436 3437 3438Strain fitness (log2 ratio) -1 0 1 2 3at 3437.909 kb on + strandat 3437.909 kb on + strandat 3437.909 kb on + strandat 3437.909 kb on + strandat 3437.917 kb on - strandat 3437.917 kb on - strandat 3438.005 kb on + strandat 3438.009 kb on - strandat 3438.090 kb on + strandat 3438.103 kb on - strandat 3438.128 kb on + strandat 3438.150 kb on + strandat 3438.150 kb on + strandat 3438.169 kb on + strandat 3438.177 kb on - strand, within PGA1_c32790at 3438.178 kb on - strand, within PGA1_c32790at 3438.205 kb on + strand, within PGA1_c32790at 3438.213 kb on - strand, within PGA1_c32790at 3438.213 kb on - strand, within PGA1_c32790at 3438.213 kb on - strand, within PGA1_c32790at 3438.260 kb on + strand, within PGA1_c32790at 3438.268 kb on - strand, within PGA1_c32790at 3438.348 kb on + strand, within PGA1_c32790at 3438.456 kb on - strand, within PGA1_c32790at 3438.480 kb on + strand, within PGA1_c32790at 3438.511 kb on + strand, within PGA1_c32790at 3438.618 kb on - strand, within PGA1_c32790at 3438.629 kb on + strand, within PGA1_c32790at 3438.637 kb on - strand, within PGA1_c32790at 3438.647 kb on + strand, within PGA1_c32790at 3438.665 kb on + strand, within PGA1_c32790at 3438.665 kb on + strand, within PGA1_c32790at 3438.755 kb on + strand, within PGA1_c32790at 3438.795 kb on + strand, within PGA1_c32790at 3438.797 kb on + strand, within PGA1_c32790

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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3,437,909 + -1.0
3,437,909 + +0.3
3,437,909 + +0.3
3,437,909 + -0.4
3,437,917 - +2.6
3,437,917 - +0.6
3,438,005 + +0.5
3,438,009 - -1.2
3,438,090 + -0.4
3,438,103 - -0.0
3,438,128 + +0.6
3,438,150 + +0.5
3,438,150 + -1.0
3,438,169 + +3.2
3,438,177 - PGA1_c32790 0.10 -1.1
3,438,178 - PGA1_c32790 0.10 +1.4
3,438,205 + PGA1_c32790 0.13 +0.3
3,438,213 - PGA1_c32790 0.14 +0.7
3,438,213 - PGA1_c32790 0.14 -0.7
3,438,213 - PGA1_c32790 0.14 -0.7
3,438,260 + PGA1_c32790 0.19 +0.3
3,438,268 - PGA1_c32790 0.19 -0.8
3,438,348 + PGA1_c32790 0.28 +1.2
3,438,456 - PGA1_c32790 0.38 -0.7
3,438,480 + PGA1_c32790 0.41 -1.6
3,438,511 + PGA1_c32790 0.44 +1.0
3,438,618 - PGA1_c32790 0.55 -0.0
3,438,629 + PGA1_c32790 0.56 -0.6
3,438,637 - PGA1_c32790 0.57 -0.4
3,438,647 + PGA1_c32790 0.58 -0.3
3,438,665 + PGA1_c32790 0.60 -1.6
3,438,665 + PGA1_c32790 0.60 +0.6
3,438,755 + PGA1_c32790 0.69 -0.7
3,438,795 + PGA1_c32790 0.73 -0.9
3,438,797 + PGA1_c32790 0.73 +0.6

Or see this region's nucleotide sequence