Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c32760 and PGA1_c32770 overlap by 1 nucleotides PGA1_c32770 and PGA1_c32780 are separated by 14 nucleotides PGA1_c32780 and PGA1_c32790 are separated by 221 nucleotides
PGA1_c32760: PGA1_c32760 - manganese transport system membrane protein MntC, at 3,434,775 to 3,435,980
_c32760
PGA1_c32770: PGA1_c32770 - manganese transport system ATP-binding protein MntB, at 3,435,980 to 3,436,828
_c32770
PGA1_c32780: PGA1_c32780 - manganese-binding lipoprotein MntA, at 3,436,843 to 3,437,853
_c32780
PGA1_c32790: PGA1_c32790 - putative deoxyribose-phosphate aldolase, at 3,438,075 to 3,439,064
_c32790
Position (kb)
3436
3437
3438 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3437.909 kb on + strand at 3437.909 kb on + strand at 3437.909 kb on + strand at 3437.909 kb on + strand at 3437.917 kb on - strand at 3437.917 kb on - strand at 3438.005 kb on + strand at 3438.009 kb on - strand at 3438.090 kb on + strand at 3438.103 kb on - strand at 3438.128 kb on + strand at 3438.150 kb on + strand at 3438.150 kb on + strand at 3438.169 kb on + strand at 3438.177 kb on - strand, within PGA1_c32790 at 3438.178 kb on - strand, within PGA1_c32790 at 3438.205 kb on + strand, within PGA1_c32790 at 3438.213 kb on - strand, within PGA1_c32790 at 3438.213 kb on - strand, within PGA1_c32790 at 3438.213 kb on - strand, within PGA1_c32790 at 3438.260 kb on + strand, within PGA1_c32790 at 3438.268 kb on - strand, within PGA1_c32790 at 3438.348 kb on + strand, within PGA1_c32790 at 3438.456 kb on - strand, within PGA1_c32790 at 3438.480 kb on + strand, within PGA1_c32790 at 3438.511 kb on + strand, within PGA1_c32790 at 3438.618 kb on - strand, within PGA1_c32790 at 3438.629 kb on + strand, within PGA1_c32790 at 3438.637 kb on - strand, within PGA1_c32790 at 3438.647 kb on + strand, within PGA1_c32790 at 3438.665 kb on + strand, within PGA1_c32790 at 3438.665 kb on + strand, within PGA1_c32790 at 3438.755 kb on + strand, within PGA1_c32790 at 3438.795 kb on + strand, within PGA1_c32790 at 3438.797 kb on + strand, within PGA1_c32790
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 3,437,909 + -1.0 3,437,909 + +0.3 3,437,909 + +0.3 3,437,909 + -0.4 3,437,917 - +2.6 3,437,917 - +0.6 3,438,005 + +0.5 3,438,009 - -1.2 3,438,090 + -0.4 3,438,103 - -0.0 3,438,128 + +0.6 3,438,150 + +0.5 3,438,150 + -1.0 3,438,169 + +3.2 3,438,177 - PGA1_c32790 0.10 -1.1 3,438,178 - PGA1_c32790 0.10 +1.4 3,438,205 + PGA1_c32790 0.13 +0.3 3,438,213 - PGA1_c32790 0.14 +0.7 3,438,213 - PGA1_c32790 0.14 -0.7 3,438,213 - PGA1_c32790 0.14 -0.7 3,438,260 + PGA1_c32790 0.19 +0.3 3,438,268 - PGA1_c32790 0.19 -0.8 3,438,348 + PGA1_c32790 0.28 +1.2 3,438,456 - PGA1_c32790 0.38 -0.7 3,438,480 + PGA1_c32790 0.41 -1.6 3,438,511 + PGA1_c32790 0.44 +1.0 3,438,618 - PGA1_c32790 0.55 -0.0 3,438,629 + PGA1_c32790 0.56 -0.6 3,438,637 - PGA1_c32790 0.57 -0.4 3,438,647 + PGA1_c32790 0.58 -0.3 3,438,665 + PGA1_c32790 0.60 -1.6 3,438,665 + PGA1_c32790 0.60 +0.6 3,438,755 + PGA1_c32790 0.69 -0.7 3,438,795 + PGA1_c32790 0.73 -0.9 3,438,797 + PGA1_c32790 0.73 +0.6
Or see this region's nucleotide sequence